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丝状噬菌体螺旋的手部结构。

The hand of the filamentous bacteriophage helix.

作者信息

Straus S K, Scott W R P, Marvin D A

机构信息

Department of Chemistry, University of British Columbia, V6T 1Z1, BC, Canada.

出版信息

Eur Biophys J. 2008 Jul;37(6):1077-82. doi: 10.1007/s00249-008-0327-7. Epub 2008 Apr 18.

Abstract

Filamentous bacteriophage (Inovirus) is a widely studied model system in molecular biophysics. The structure of the virion has been analysed by various methods, but the methods have seldom questioned the hand of the virion helix. The hand of the helix relating the protein subunits in the class II virus strain Pf1 was chosen by calculating an electron-density distribution from X-ray fibre diffraction data, using a maximum-entropy method, but to our knowledge this method has not been used for a similar purpose in any other system. Moreover, this same hand was extended only by analogy, with no direct analysis of the corresponding data, to the class I virus strain Ff (fd, f1, M13), which has a different helix symmetry. Here we use published solid-state NMR data to confirm the validity of the hand of Pf1 chosen by the maximum-entropy method, and to confirm the extension to Ff.

摘要

丝状噬菌体(丝状病毒科)是分子生物物理学中一个被广泛研究的模型系统。病毒粒子的结构已通过各种方法进行了分析,但这些方法很少对病毒粒子螺旋的旋向提出质疑。通过使用最大熵方法从X射线纤维衍射数据计算电子密度分布,确定了II类病毒株Pf1中与蛋白质亚基相关的螺旋旋向,但据我们所知,该方法尚未在任何其他系统中用于类似目的。此外,仅通过类推将相同的旋向扩展到具有不同螺旋对称性的I类病毒株Ff(fd、f1、M13),而没有对相应数据进行直接分析。在这里,我们使用已发表的固态核磁共振数据来确认通过最大熵方法选择的Pf1旋向的有效性,并确认其对Ff的扩展。

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