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来自 X 射线纤维衍射和固态 NMR 的 Pf1 丝状噬菌体的共识结构。

Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR.

机构信息

Department of Chemistry, University of British Columbia, Vancouver, BC V6T1Z1, Canada.

出版信息

Eur Biophys J. 2011 Mar;40(3):221-34. doi: 10.1007/s00249-010-0640-9. Epub 2010 Nov 17.

Abstract

Filamentous bacteriophages (filamentous bacterial viruses or Inovirus) are simple and well-characterised macromolecular assemblies that are widely used in molecular biology and biophysics, both as paradigms for studying basic biological questions and as practical tools in areas as diverse as immunology and solid-state physics. The strains fd, M13 and f1 are virtually identical filamentous phages that infect bacteria expressing F-pili, and are sometimes grouped as the Ff phages. For historical reasons fd has often been used for structural studies, but M13 and f1 are more often used for biological experiments. Many other strains have been identified that are genetically quite distinct from Ff and yet have a similar molecular structure and life cycle. One of these, Pf1, gives the highest resolution X-ray fibre diffraction patterns known for filamentous bacteriophage. These diffraction patterns have been used in the past to derive a molecular model for the structure of the phage. Solid-state NMR experiments have been used in separate studies to derive a significantly different model of Pf1. Here we combine previously published X-ray fibre diffraction data and solid-state NMR data to give a consensus structure model for Pf1 filamentous bacteriophage, and we discuss the implications of this model for assembly of the phage at the bacterial membrane.

摘要

丝状噬菌体(丝状细菌病毒或 Inovirus)是简单且特征明确的高分子组装体,广泛应用于分子生物学和生物物理学领域,既是研究基本生物学问题的范例,也是免疫学和固态物理学等不同领域的实用工具。fd、M13 和 f1 这三种丝状噬菌体几乎完全相同,它们感染表达 F 菌毛的细菌,有时被归为 Ff 噬菌体。由于历史原因,fd 噬菌体常被用于结构研究,但 M13 和 f1 噬菌体则更常用于生物学实验。已经鉴定出许多其他与 Ff 噬菌体在遗传上有很大差异但具有相似分子结构和生命周期的菌株。其中 Pf1 噬菌体产生的丝状噬菌体 X 射线纤维衍射图谱具有已知最高分辨率。这些衍射图谱过去曾被用于推导噬菌体结构的分子模型。固态 NMR 实验也分别用于推导 Pf1 的一个明显不同的模型。在这里,我们结合之前发表的 X 射线纤维衍射数据和固态 NMR 数据,为 Pf1 丝状噬菌体提供一个共识结构模型,并讨论该模型对噬菌体在细菌膜上组装的影响。

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