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动态刺激模式在双稳态细胞内网络分析中的作用。

The role of dynamic stimulation pattern in the analysis of bistable intracellular networks.

作者信息

Millat Thomas, Sreenath Sree N, Soebiyanto Radina P, Avva Jayant, Cho Kwang-Hyun, Wolkenhauer Olaf

机构信息

University of Rostock, 18051 Rostock, Germany.

出版信息

Biosystems. 2008 Jun;92(3):270-81. doi: 10.1016/j.biosystems.2008.03.007. Epub 2008 Apr 4.

Abstract

Bistable systems play an important role in the functioning of living cells. Depending on the strength of the necessary positive feedback one can distinguish between (irreversible) "one-way switch" or (reversible) "toggle-switch" type behavior. Besides the well- established steady-state properties, some important characteristics of bistable systems arise from an analysis of their dynamics. We demonstrate that a supercritical stimulus amplitude is not sufficient to move the system from the lower (off-state) to the higher branch (on-state) for either a step or a pulse input. A switching surface is identified for the system as a function of the initial condition, input pulse amplitude and duration (a supercritical signal). We introduce the concept of bounded autonomy for single level systems with a pulse input. Towards this end, we investigate and characterize the role of the duration of the stimulus. Furthermore we show, that a minimal signal power is also necessary to change the steady state of the bistable system. This limiting signal power is independent of the applied stimulus and is determined only by systems parameters. These results are relevant for the design of experiments, where it is often difficult to create a defined pattern for the stimulus. Furthermore, intracellular processes, like receptor internalization, do manipulate the level of stimulus such that level and duration of the stimulus is conducive to characteristic behavior.

摘要

双稳态系统在活细胞的功能中起着重要作用。根据必要的正反馈强度,可以区分(不可逆的)“单向开关”或(可逆的)“拨动开关”类型的行为。除了已确立的稳态特性外,双稳态系统的一些重要特征源于对其动力学的分析。我们证明,对于阶跃或脉冲输入,超临界刺激幅度不足以使系统从较低分支(关态)移动到较高分支(开态)。作为初始条件、输入脉冲幅度和持续时间(超临界信号)的函数,为系统确定了一个切换面。我们引入了具有脉冲输入的单级系统的有界自主性概念。为此,我们研究并表征了刺激持续时间的作用。此外,我们还表明,改变双稳态系统的稳态也需要最小信号功率。这种极限信号功率与所施加的刺激无关,仅由系统参数决定。这些结果与实验设计相关,在实验中通常很难为刺激创建定义好的模式。此外,细胞内过程,如受体内化,确实会操纵刺激水平,使得刺激的水平和持续时间有利于产生特征性行为。

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