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病毒的多学科研究:结构在塑造问题与答案中的作用

Multi-disciplinary studies of viruses: the role of structure in shaping the questions and answers.

作者信息

Johnson John E

机构信息

Department of Molecular Biology, The Scripps Research Institute, MB-31, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA.

出版信息

J Struct Biol. 2008 Sep;163(3):246-53. doi: 10.1016/j.jsb.2008.03.013. Epub 2008 Apr 6.

Abstract

This contribution to the 50th anniversary issue of the Journal of Structural Biology traces a path in which the author evolved from seeing macromolecular structure as end in it self to a means of organizing and correlating data from many sources. The author looks at where we have been and where we are going in this enterprise and the role that structure plays in defining ever more ambitious biological questions and testing and refining models that incorporate data from many techniques. In this, essentially, personal account, the author reflects on 35 years of structural virology and the stages experienced; from "stand alone" crystallography of virus particles to the study of virus assembly and maturation in vitro and eventually into the entire virus infection process from particle cell entry to egress. In the process data from many sources were incorporated into reasonable and testable models based on structures ranging in resolution from near-atomic determined by crystallography, to nanometer, determined by electron cryo-microscopy and image reconstruction, to five nanometer tomographic studies in the cell. The technological development over this period, for structural studies at all resolutions and functional studies that were unimaginable three decades ago, has been astonishing. Here we look at an aspect of this development applied to virology.

摘要

这篇为《结构生物学杂志》创刊50周年特刊撰写的文章,追溯了作者从将大分子结构视为目的本身,发展到将其作为一种整合和关联来自多种来源数据的手段的历程。作者审视了我们在这一领域的过往与未来,以及结构在定义日益宏大的生物学问题、检验和完善整合多种技术数据的模型中所起的作用。在这篇本质上属于个人的记述中,作者回顾了35年的结构病毒学及所经历的阶段;从病毒颗粒的“孤立”晶体学研究,到体外病毒组装和成熟的研究,最终深入到从病毒颗粒进入细胞到释放的整个病毒感染过程。在此过程中,来自多种来源的数据被整合到基于不同分辨率结构的合理且可检验的模型中,这些结构的分辨率范围从晶体学确定的近原子分辨率,到冷冻电子显微镜和图像重建确定的纳米分辨率为纳米分辨率,再到细胞内五纳米的断层扫描研究。在这一时期,用于各种分辨率结构研究以及三十年前难以想象的功能研究的技术发展令人惊叹。在此,我们审视这一发展在病毒学中的一个应用方面。

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本文引用的文献

1
Structure of southern bean mosaic virus at 2.8 A resolution.
Nature. 1980 Jul 3;286(5768):33-9. doi: 10.1038/286033a0.
2
Tomato bushy stunt virus at 2.9 A resolution.
Nature. 1978 Nov 23;276(5686):368-73. doi: 10.1038/276368a0.
4
Rescue of maturation-defective flock house virus infectivity with noninfectious, mature, viruslike particles.
J Virol. 2008 Feb;82(4):2025-7. doi: 10.1128/JVI.02278-07. Epub 2007 Dec 12.
5
The molecular architecture of the nuclear pore complex.
Nature. 2007 Nov 29;450(7170):695-701. doi: 10.1038/nature06405.
6
Determining the architectures of macromolecular assemblies.
Nature. 2007 Nov 29;450(7170):683-94. doi: 10.1038/nature06404.
7
Visualizing flock house virus infection in Drosophila cells with correlated fluorescence and electron microscopy.
J Struct Biol. 2008 Mar;161(3):439-46. doi: 10.1016/j.jsb.2007.09.009. Epub 2007 Sep 19.
9
Correlative microscopy: bridging the gap between fluorescence light microscopy and cryo-electron tomography.
J Struct Biol. 2007 Nov;160(2):135-45. doi: 10.1016/j.jsb.2007.07.011. Epub 2007 Aug 16.
10
3-D ultrastructure of O. tauri: electron cryotomography of an entire eukaryotic cell.
PLoS One. 2007 Aug 15;2(8):e749. doi: 10.1371/journal.pone.0000749.

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