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通过折叠动力学限制的无定形到结晶转变的 S 层自催化生长。

Self-catalyzed growth of S layers via an amorphous-to-crystalline transition limited by folding kinetics.

机构信息

Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

出版信息

Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16536-41. doi: 10.1073/pnas.1008280107. Epub 2010 Sep 7.

DOI:10.1073/pnas.1008280107
PMID:20823255
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2944705/
Abstract

The importance of nonclassical, multistage crystallization pathways is increasingly evident from theoretical studies on colloidal systems and experimental investigations of proteins and biomineral phases. Although theoretical predictions suggest that proteins follow these pathways as a result of fluctuations that create unstable dense-liquid states, microscopic studies indicate these states are long-lived. Using in situ atomic force microscopy to follow 2D assembly of S-layer proteins on supported lipid bilayers, we have obtained a molecular-scale picture of multistage protein crystallization that reveals the importance of conformational transformations in directing the pathway of assembly. We find that monomers with an extended conformation first form a mobile adsorbed phase, from which they condense into amorphous clusters. These clusters undergo a phase transition through S-layer folding into crystalline clusters composed of compact tetramers. Growth then proceeds by formation of new tetramers exclusively at cluster edges, implying tetramer formation is autocatalytic. Analysis of the growth kinetics leads to a quantitative model in which tetramer creation is rate limiting. However, the estimated barrier is much smaller than expected for folding of isolated S-layer proteins, suggesting an energetic rationale for this multistage pathway.

摘要

非经典的多阶段结晶途径的重要性越来越明显,这是从胶体系统的理论研究和蛋白质和生物矿物相的实验研究中得出的。虽然理论预测表明,由于产生不稳定的稠密液体状态的波动,蛋白质会遵循这些途径,但微观研究表明这些状态是长寿命的。我们使用原位原子力显微镜跟踪支撑脂质双层上 S 层蛋白的 2D 组装,获得了多阶段蛋白质结晶的分子尺度图像,揭示了构象转化在指导组装途径方面的重要性。我们发现,具有伸展构象的单体首先形成可移动的吸附相,它们从吸附相中凝聚成无定形的团簇。这些团簇通过 S 层折叠成由紧密四聚体组成的结晶团簇经历相转变。然后通过仅在团簇边缘形成新的四聚体进行生长,这意味着四聚体的形成是自催化的。对生长动力学的分析导致了一个定量模型,其中四聚体的形成是限速步骤。然而,估计的势垒比孤立 S 层蛋白折叠的预期势垒小得多,这表明这种多阶段途径具有能量上的合理性。