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SNPforID浏览器:一个用于查询和显示SNPforID项目频率数据的在线工具。

The SNPforID browser: an online tool for query and display of frequency data from the SNPforID project.

作者信息

Amigo Jorge, Phillips Christopher, Lareu Maviky, Carracedo Angel

机构信息

Spanish National Genotyping Center (CeGen) and Genomic Medicine Group, CIBERER, University of Santiago de Compostela, Santiago de Compostela, Spain.

出版信息

Int J Legal Med. 2008 Sep;122(5):435-40. doi: 10.1007/s00414-008-0233-7. Epub 2008 May 20.

Abstract

The SNPforID browser is a web-based tool for the query and visualization of the SNP allele frequency data generated by the SNPforID consortium ( http://www.snpforid.org/ ). From this project, validated panels of single nucleotide polymorphisms (SNPs) for a variety of forensic applications have been generated with the browser concentrating on the single-tube identification SNP set comprising 52 markers. A web interface allows the visitor to review the allele frequencies of the studied markers from all the available populations used by SNPforID to validate global SNP variability. The interface has been designed to offer the useful facility of combining populations into appropriate geographic groups for visual comparison of populations individually or amongst user-defined groupings and with equivalent HapMap data.

摘要

SNPforID浏览器是一种基于网络的工具,用于查询和可视化由SNPforID联盟(http://www.snpforid.org/ )生成的单核苷酸多态性(SNP)等位基因频率数据。通过该项目,已生成了适用于各种法医应用的经过验证的单核苷酸多态性(SNP)面板,该浏览器专注于包含52个标记的单管识别SNP集。网络界面允许访问者查看SNPforID用于验证全球SNP变异性的所有可用群体中研究标记的等位基因频率。该界面旨在提供一项有用的功能,即将群体组合成适当的地理组,以便单独或在用户定义的分组中对群体进行视觉比较,并与等效的HapMap数据进行比较。

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