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利用亚硫酸氢盐修饰产生的新限制性酶切位点对DNA甲基化进行快速分析。

Rapid analysis of DNA methylation using new restriction enzyme sites created by bisulfite modification.

作者信息

Sadri R, Hornsby P J

机构信息

Huffington Center on Aging and Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, USA.

出版信息

Nucleic Acids Res. 1996 Dec 15;24(24):5058-9. doi: 10.1093/nar/24.24.5058.

DOI:10.1093/nar/24.24.5058
PMID:9016683
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC146335/
Abstract

Bisulfite converts non-methylated cytosine in DNA to uracil leaving 5-methylcytosine unaltered. Here, predicted changes in restriction enzyme sites following reaction of genomic DNA with bisulfite and amplification of the product by the polymerase chain reaction (PCR) were used to assess the methylation of CpG sites. This procedure differs from conventional DNA methylation analysis by methylation-sensitive restriction enzymes because it does not rely on an absence of cleavage to detect methylated sites, the two strands of DNA produce different restriction enzyme sites and may be differentially analyzed, and closely related sequences may be separately analyzed by using specific PCR primers.

摘要

亚硫酸氢盐可将DNA中的非甲基化胞嘧啶转化为尿嘧啶,而5-甲基胞嘧啶则保持不变。在此,通过基因组DNA与亚硫酸氢盐反应后预测的限制性酶切位点变化以及聚合酶链反应(PCR)对产物的扩增来评估CpG位点的甲基化情况。该方法不同于传统的利用甲基化敏感限制性酶进行的DNA甲基化分析,因为它不依赖于未切割来检测甲基化位点,DNA的两条链会产生不同的限制性酶切位点且可进行差异分析,并且通过使用特异性PCR引物可对密切相关的序列进行单独分析。

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本文引用的文献

1
Methylation analysis on individual chromosomes: improved protocol for bisulphite genomic sequencing.单个染色体的甲基化分析:亚硫酸氢盐基因组测序的改进方案
Nucleic Acids Res. 1994 Feb 25;22(4):695-6. doi: 10.1093/nar/22.4.695.
2
PCR with 5-methyl-dCTP replacing dCTP.使用5-甲基-dCTP替代dCTP进行聚合酶链式反应(PCR)。
Nucleic Acids Res. 1991 Mar 11;19(5):1081-5. doi: 10.1093/nar/19.5.1081.
3
Culturing steroidogenic cells.
Methods Enzymol. 1991;206:371-80. doi: 10.1016/0076-6879(91)06107-e.
4
Demethylation of specific sites in the 5'-flanking region of the CYP17 genes when bovine adrenocortical cells are placed in culture.
DNA Cell Biol. 1992 Jun;11(5):385-95. doi: 10.1089/dna.1992.11.385.
5
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.一种基因组测序方案,可在单条DNA链中对5-甲基胞嘧啶残基进行阳性显示。
Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1827-31. doi: 10.1073/pnas.89.5.1827.