Faure Matthieu F, David Patrice, Bonhomme François, Bierne Nicolas
Université Montpellier II, Place Eugène Bataillon, 34095 Montpellier, France.
BMC Evol Biol. 2008 May 30;8:164. doi: 10.1186/1471-2148-8-164.
Few models of genetic hitchhiking in subdivided populations have been developed and the rarity of empirical examples is even more striking. We here provide evidences of genetic hitchhiking in a subdivided population of the marine mussel Mytilus edulis. In the Bay of Biscay (France), a patch of M. edulis populations happens to be separated from its North Sea conspecifics by a wide region occupied only by the sister species M. galloprovincialis. Although genetic differentiation between the two M. edulis regions is largely non-significant at ten marker loci (average FST~0.007), a strong genetic differentiation is observed at a single locus (FST = 0.25). We validated the outlier status of this locus, and analysed DNA sequence polymorphism in order to identify the nature of the selection responsible for the unusual differentiation.
We first showed that introgression of M. galloprovincialis alleles was very weak in both populations and did not significantly affect their differentiation. Secondly, we observed the genetic signature of a selective sweep within both M. edulis populations in the form of a star-shaped clade of alleles. This clade was nearly fixed in the North Sea and was segregating at a moderate frequency in the Bay of Biscay, explaining their genetic differentiation. Incomplete fixation reveals that selection was not direct on the locus but that the studied sequence recombined with a positively selected allele at a linked locus while it was on its way to fixation. Finally, using a deterministic model we showed that the wave of advance of a favourable allele at a linked locus, when crossing a strong enough barrier to gene flow, generates a step in neutral allele frequencies comparable to the step observed between the two M. edulis populations at the outlier locus. In our case, the position of the barrier is now materialised by a large patch of heterospecific M. galloprovincialis populations.
High FST outlier loci are usually interpreted as being the consequence of ongoing divergent local adaptation. Combining models and data we show that among-population differentiation can also dramatically increase following a selective sweep in a structured population. Our study illustrates how a striking geographical pattern of neutral diversity can emerge from past indirect hitchhiking selection in a structured population. NOTE: Nucleotide sequences reported in this paper are available in the GenBanktrade mark database under the accession numbers EU684165 - EU684228.
针对细分种群中基因搭便车现象的模型很少,实证案例更是罕见。我们在此提供了食用贻贝(Mytilus edulis)细分种群中基因搭便车现象的证据。在法国的比斯开湾,一小片食用贻贝种群与北海的同种贻贝被一个仅由其姊妹物种加利福尼亚贻贝(M. galloprovincialis)占据的广阔区域隔开。尽管在十个标记位点上,两个食用贻贝区域之间的遗传分化在很大程度上不显著(平均FST约为0.007),但在单个位点上观察到了强烈的遗传分化(FST = 0.25)。我们验证了该位点的异常状态,并分析了DNA序列多态性,以确定导致这种异常分化的选择性质。
我们首先表明,加利福尼亚贻贝等位基因在两个种群中的渗入非常微弱,并且对它们的分化没有显著影响。其次,我们在两个食用贻贝种群中都观察到了选择性清除的遗传特征,其形式为等位基因的星形分支。这个分支在北海几乎固定,在比斯开湾以中等频率分离,解释了它们的遗传分化。不完全固定表明选择并非直接作用于该位点,而是所研究的序列在固定过程中与一个连锁位点上的正选择等位基因发生了重组。最后,使用一个确定性模型,我们表明,当一个有利等位基因在连锁位点上的推进波越过一个足够强大的基因流动障碍时,会在中性等位基因频率上产生一个台阶,这与在异常位点上两个食用贻贝种群之间观察到的台阶相当。在我们的案例中,障碍的位置现在由一大片异种的加利福尼亚贻贝种群体现出来。
高FST异常位点通常被解释为正在进行的局部适应性分化的结果。结合模型和数据,我们表明,在结构化种群中进行选择性清除后,种群间的分化也可能显著增加。我们的研究说明了在结构化种群中,过去的间接搭便车选择如何能导致显著的中性多样性地理格局。注意:本文报道的核苷酸序列可在GenBank商标数据库中获取,登录号为EU684165 - EU684228。