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跨大西洋分布和基因渗入的推断:贻贝类和环境因素的单核苷酸多态性分析。

Trans-Atlantic Distribution and Introgression as Inferred from Single Nucleotide Polymorphism: Mussels and Environmental Factors.

机构信息

Institute of Oceanology, Polish Academy of Sciences, 81-712 Sopot, Poland.

Arctic Research Centre, Department of Bioscience, Aarhus University, 4000 Roskilde, Denmark.

出版信息

Genes (Basel). 2020 May 10;11(5):530. doi: 10.3390/genes11050530.

Abstract

Large-scale climate changes influence the geographic distribution of biodiversity. Many taxa have been reported to extend or reduce their geographic range, move poleward or displace other species. However, for closely related species that can hybridize in the natural environment, displacement is not the only effect of changes of environmental variables. Another option is subtler, hidden expansion, which can be found using genetic methods only. The marine blue mussels are known to change their geographic distribution despite being sessile animals. In addition to natural dissemination at larval phase-enhanced by intentional or accidental introductions and rafting-they can spread through hybridization and introgression with local congeners, which can create mixed populations sustaining in environmental conditions that are marginal for pure taxa. The species have a wide distribution in coastal regions of the Northern and Southern Hemisphere. In this study, we investigated the inter-regional genetic differentiation of the species complex at 53 locations in the North Atlantic and adjacent Arctic waters and linked this genetic variability to key local environmental drivers. Of seventy-nine candidate single nucleotide polymorphisms (SNPs), all samples were successfully genotyped with a subset of 54 SNPs. There was a clear interregional separation of species. However, all three species hybridized in the contact area and created hybrid zones with mixed populations. Boosted regression trees (BRT) models showed that inter-regional variability was important in many allele models but did not prevail over variability in local environmental factors. Local environmental variables described over 40% of variability in about 30% of the allele frequencies of spp. For the 30% of alleles, variability in their frequencies was only weakly coupled with local environmental conditions. For most studied alleles the linkages between environmental drivers and the genetic variability of spp. were random in respect to "coding" and "non-coding" regions. An analysis of the subset of data involving functional genes only showed that two SNPs at Hsp70 and ATPase genes correlated with environmental variables. Total predictive ability of the highest performing models ( between 0.550 and 0.801) were for alleles that discriminated most effectively from and whereas the best performing allele model (BM101A) did the best at discriminating from and . Among the local environmental variables, salinity, water temperature, ice cover and chlorophyll concentration were by far the greatest predictors, but their predictive performance varied among different allele models. In most cases changes in the allele frequencies along these environmental gradients were abrupt and occurred at a very narrow range of environmental variables. In general, regions of change in allele frequencies for occurred at 8-11 psu, 0-10 C, 60%-70% of ice cover and 0-2 mg m of chlorophyll , M. edulis at 8-11 and 30-35 psu, 10-14 C and 60%-70% of ice cover and for at 30-35 psu, 14-20 C.

摘要

大规模的气候变化影响着生物多样性的地理分布。许多类群的地理分布范围已经被报道过扩展或缩小、向极地方向移动或与其他物种发生取代。然而,对于那些在自然环境中可以杂交的密切相关的物种来说,环境变量的变化并不仅仅是取代的结果。另一种选择是更微妙的、隐藏的扩张,只有通过遗传方法才能发现。尽管海洋贻贝是固着动物,但它们的地理分布也会发生变化。除了幼虫期的自然传播——通过有意或无意的引入和漂流来增强——它们还可以通过与当地同属种的杂交和基因渗入来传播,这可能会创造出混合种群,以维持在对纯种群来说是边缘的环境条件下。这些物种在北半球和南半球的沿海地区广泛分布。在这项研究中,我们在北大西洋和邻近的北极水域的 53 个地点调查了贻贝种复合体的区域间遗传分化,并将这种遗传变异性与关键的局部环境驱动因素联系起来。在 79 个候选单核苷酸多态性(SNP)中,我们成功地对所有样本进行了基因分型,其中包括 54 个 SNP 的子集。种间存在明显的区域分离。然而,所有三种贻贝在接触区杂交,并形成了混合种群的杂交区。增强回归树(BRT)模型显示,区域间变异性在许多等位基因模型中很重要,但并不超过局部环境因素的变异性。局部环境变量描述了约 30%的等位基因频率的 种的 40%以上的变异性。对于 30%的等位基因,其频率的变异性与当地环境条件的关系较弱。对于大多数研究的等位基因,环境驱动因素与 种的遗传变异性之间的联系在“编码”和“非编码”区域都是随机的。对仅涉及功能基因的子集数据的分析表明,Hsp70 和 ATPase 基因的两个 SNP 与环境变量相关。表现最好的模型(0.550 到 0.801 之间)的总预测能力是区分 、 和 最有效的等位基因,而表现最好的等位基因模型( BM101A )最擅长区分 、 和 。在局部环境变量中,盐度、水温、冰盖和叶绿素浓度是迄今为止最大的预测因子,但它们的预测性能在不同的等位基因模型中有所不同。在大多数情况下,这些环境梯度上的等位基因频率变化是突然发生的,而且发生在非常狭窄的环境变量范围内。一般来说, 种等位基因频率变化的区域发生在 8-11 psu、0-10°C、60%-70%的冰盖和 0-2mg m 的叶绿素范围内, 种发生在 8-11 和 30-35 psu、10-14°C 和 60%-70%的冰盖范围内, 种发生在 30-35 psu、14-20°C。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3579/7288462/1ceab75eea60/genes-11-00530-g001.jpg

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