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病毒基因组的包装纳米力学

Packing nanomechanics of viral genomes.

作者信息

Siber A, Dragar M, Parsegian V A, Podgornik R

机构信息

Institute of Physics, Zagreb, Croatia.

出版信息

Eur Phys J E Soft Matter. 2008 Jul;26(3):317-25. doi: 10.1140/epje/i2008-10330-7. Epub 2008 Jun 5.

Abstract

We investigate the osmotic equilibrium between a bulk polyethylene glycol (PEG) solution and DNA tightly packed in a spherical capsid. We base our analysis on the equations of thermodynamic equilibrium in terms of osmotic pressure. The equality between external osmotic pressure of PEG and osmotic pressure of tightly packed DNA gives us the DNA encapsidation curves. In this way we directly connect the wealth of existing osmotic pressure data for DNA in the bulk with the DNA encapsidation curves within small viral capsids. Specific calculations are made for a monovalent salt, Na(+) -DNA and a divalent salt, Mn(2+) -DNA that have quite different DNA encapsidation behaviors. The main conclusion of our work is that bending energy of DNA is of minor importance regarding the encapsidated DNA length, but has a non-negligible influence on the density distribution of DNA within the capsid.

摘要

我们研究了大量聚乙二醇(PEG)溶液与紧密包装在球形衣壳中的DNA之间的渗透平衡。我们的分析基于渗透压方面的热力学平衡方程。PEG的外部渗透压与紧密包装的DNA的渗透压相等,这为我们提供了DNA衣壳化曲线。通过这种方式,我们直接将大量关于散装DNA的现有渗透压数据与小病毒衣壳内的DNA衣壳化曲线联系起来。针对具有截然不同的DNA衣壳化行为的单价盐Na(+) -DNA和二价盐Mn(2+) -DNA进行了具体计算。我们工作的主要结论是,就衣壳化的DNA长度而言,DNA的弯曲能量不太重要,但对衣壳内DNA的密度分布有不可忽略的影响。

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本文引用的文献

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Biophys J. 2005 Jun;88(6):3912-23. doi: 10.1529/biophysj.104.052738. Epub 2005 Apr 1.
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Forces during bacteriophage DNA packaging and ejection.噬菌体DNA包装和释放过程中的力。
Biophys J. 2005 Feb;88(2):851-66. doi: 10.1529/biophysj.104.047134. Epub 2004 Nov 19.
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Philos Trans A Math Phys Eng Sci. 2004 Jul 15;362(1820):1497-517. doi: 10.1098/rsta.2004.1385.
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Osmotic pressure inhibition of DNA ejection from phage.渗透压对噬菌体DNA释放的抑制作用
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