Yogavel Manickam, Mishra Prakash Chandra, Gill Jasmita, Bhardwaj Pardeep Kumar, Dutt Som, Kumar Sanjay, Ahuja Paramvir Singh, Sharma Amit
Structural and Computational Biology Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Road, New Delhi 110 067, India.
Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):892-901. doi: 10.1107/S0907444908019069. Epub 2008 Jul 17.
Superoxide dismutase (SOD) plays a central role in cellular defence against oxidative stress and is of pharmaceutical importance. The SOD from Potentilla atrosanguinea (Pa-SOD) is a unique enzyme as it possesses free-radical scavenging capability at temperatures ranging between 263 and 353 K. The crystal structure of recombinant Pa-SOD has been determined to 2.3 A resolution. The active-site residues are well ordered and additional water molecules are present in place of a bound copper ion. There is a significant difference in the relative orientation of the two subunits of Pa-SOD and asymmetry is also present in numerous hydrogen-bonding interactions. Structures of SODs, both bound with copper and unbound, have been compared with respect to the orientation of the electrostatic and Greek-key loops. This analysis provides new insights into the copper-chelation process in SODs. Several new structural features in Pa-SOD which may be responsible for its unique properties of thermostability and expanded range of antioxidant activity are also highlighted.
超氧化物歧化酶(SOD)在细胞抵御氧化应激中起着核心作用,具有重要的药用价值。紫红委陵菜超氧化物歧化酶(Pa-SOD)是一种独特的酶,因为它在263至353 K的温度范围内具有自由基清除能力。重组Pa-SOD的晶体结构已确定至2.3 Å分辨率。活性位点残基排列有序,并且存在额外的水分子取代了结合的铜离子。Pa-SOD的两个亚基的相对取向存在显著差异,并且在许多氢键相互作用中也存在不对称性。已就静电环和希腊钥匙环的取向比较了结合铜和未结合铜的SOD的结构。该分析为SOD中的铜螯合过程提供了新的见解。还强调了Pa-SOD中的几个新结构特征,这些特征可能是其热稳定性和抗氧化活性范围扩大的独特性质的原因。