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通过点突变实现限制内切酶序列特异性的进化。

Evolution of sequence specificity in a restriction endonuclease by a point mutation.

作者信息

Saravanan Matheshwaran, Vasu Kommireddy, Nagaraja Valakunja

机构信息

Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.

出版信息

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10344-7. doi: 10.1073/pnas.0804974105. Epub 2008 Jul 22.

DOI:10.1073/pnas.0804974105
PMID:18647833
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2492507/
Abstract

Restriction endonucleases (REases) protect bacteria from invading foreign DNAs and are endowed with exquisite sequence specificity. REases have originated from the ancestral proteins and evolved new sequence specificities by genetic recombination, gene duplication, replication slippage, and transpositional events. They are also speculated to have evolved from nonspecific endonucleases, attaining a high degree of sequence specificity through point mutations. We describe here an example of generation of exquisitely site-specific REase from a highly-promiscuous one by a single point mutation.

摘要

限制性内切酶(REases)保护细菌免受外来DNA的入侵,并具有极高的序列特异性。REases起源于祖先蛋白,并通过基因重组、基因复制、复制滑移和转座事件进化出新的序列特异性。也有人推测它们是从非特异性内切酶进化而来,通过点突变获得高度的序列特异性。我们在此描述了一个通过单点突变从高度混杂的REase产生极其位点特异性REase的例子。

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本文引用的文献

1
Rational design of a chimeric endonuclease targeted to NotI recognition site.靶向NotI识别位点的嵌合核酸内切酶的合理设计。
Protein Eng Des Sel. 2007 Oct;20(10):497-504. doi: 10.1093/protein/gzm049. Epub 2007 Oct 20.
2
Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities.限制性内切酶BmrI的催化结构域作为一种切割模块,用于构建具有新型底物特异性的内切酶。
Nucleic Acids Res. 2007;35(18):6238-48. doi: 10.1093/nar/gkm665. Epub 2007 Sep 13.
3
Dual role for Zn2+ in maintaining structural integrity and inducing DNA sequence specificity in a promiscuous endonuclease.锌离子在维持一种多功能核酸内切酶的结构完整性和诱导DNA序列特异性方面的双重作用。
J Biol Chem. 2007 Nov 2;282(44):32320-6. doi: 10.1074/jbc.M705927200. Epub 2007 Sep 4.
4
Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains.通过靶标识别结构域的重排产生II型限制性内切酶的DNA切割特异性
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10358-63. doi: 10.1073/pnas.0610365104. Epub 2007 Jun 6.
5
R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca2+ and Mg2+.R.KpnI是一种HNH超家族限制性内切酶,在存在Ca2+和Mg2+的情况下,对非规范序列表现出不同的识别能力。
Nucleic Acids Res. 2007;35(8):2777-86. doi: 10.1093/nar/gkm114. Epub 2007 Apr 11.
6
REBASE--enzymes and genes for DNA restriction and modification.REBASE——DNA 限制与修饰的酶及基因
Nucleic Acids Res. 2007 Jan;35(Database issue):D269-70. doi: 10.1093/nar/gkl891.
7
Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily.II型限制性内切酶R.KpnI是HNH核酸酶超家族的成员。
Nucleic Acids Res. 2004 Nov 23;32(20):6129-35. doi: 10.1093/nar/gkh951. Print 2004.
8
Ca(2+)-mediated site-specific DNA cleavage and suppression of promiscuous activity of KpnI restriction endonuclease.钙离子介导的位点特异性DNA切割及KpnI限制性内切核酸酶混杂活性的抑制
J Biol Chem. 2004 Nov 26;279(48):49736-40. doi: 10.1074/jbc.M409483200. Epub 2004 Sep 16.
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Isolation of BsoBI restriction endonuclease variants with altered substrate specificity.具有改变的底物特异性的BsoBI限制性内切酶变体的分离。
J Mol Biol. 2003 Jul 4;330(2):359-72. doi: 10.1016/s0022-2836(03)00595-3.
10
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.限制酶、DNA甲基转移酶、归巢内切酶及其基因的命名法。
Nucleic Acids Res. 2003 Apr 1;31(7):1805-12. doi: 10.1093/nar/gkg274.