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催化丁香假单胞菌中磷霉素形成的环氧化酶的纯化与特性分析

Purification and characterization of the epoxidase catalyzing the formation of fosfomycin from Pseudomonas syringae.

作者信息

Munos Jeffrey W, Moon Sung-Ju, Mansoorabadi Steven O, Chang Weichen, Hong Lin, Yan Feng, Liu Aimin, Liu Hung-Wen

机构信息

Division of Medicinal Chemistry, College of Pharmacy, and Department of Chemistry and Biochemistry, University of Texas, Austin, Texas 78712, USA.

出版信息

Biochemistry. 2008 Aug 19;47(33):8726-35. doi: 10.1021/bi800877v. Epub 2008 Jul 26.

Abstract

The final step in the biosynthesis of fosfomycin in Streptomyces wedmorensis is catalyzed by ( S)-2-hydroxypropylphosphonic acid (HPP) epoxidase ( Sw-HppE). A homologous enzyme from Pseudomonas syringae whose encoding gene ( orf3) shares a relatively low degree of sequence homology with the corresponding Sw-HppE gene has recently been isolated. This purified P. syringae protein was determined to catalyze the epoxidation of ( S)-HPP to fosfomycin and the oxidation of ( R)-HPP to 2-oxopropylphosphonic acid under the same conditions as Sw-HppE. Therefore, this protein is indeed a true HPP epoxidase and is termed Ps-HppE. Like Sw-HppE, Ps-HppE was determined to be post-translationally modified by the hydroxylation of a putative active site tyrosine (Tyr95). Analysis of the Fe(II) center by EPR spectroscopy using NO as a spin probe and molecular oxygen surrogate reveals that Ps-HppE's metal center is similar, but not identical, to that of Sw-HppE. The identity of the rate-determining step for the ( S)-HPP and ( R)-HPP reactions was determined by measuring primary deuterium kinetic effects, and the outcome of these results was correlated with density functional theory calculations. Interestingly, the reaction using the nonphysiological substrate ( R)-HPP was 1.9 times faster than that with ( S)-HPP for both Ps-HppE and Sw-HppE. This is likely due to the difference in bond dissociation energy of the abstracted hydrogen atom for each respective reaction. Thus, despite the low level of amino acid sequence identity, Ps-HppE is a close mimic of Sw-HppE, representing a second example of a non-heme iron-dependent enzyme capable of catalyzing dehydrogenation of a secondary alcohol to form a new C-O bond.

摘要

韦氏链霉菌中磷霉素生物合成的最后一步由(S)-2-羟丙基膦酸(HPP)环氧化酶(Sw-HppE)催化。最近从丁香假单胞菌中分离出一种同源酶,其编码基因(orf3)与相应的Sw-HppE基因的序列同源性相对较低。已确定这种纯化的丁香假单胞菌蛋白在与Sw-HppE相同的条件下催化(S)-HPP环氧化生成磷霉素以及(R)-HPP氧化生成2-氧代丙基膦酸。因此,这种蛋白确实是一种真正的HPP环氧化酶,被称为Ps-HppE。与Sw-HppE一样,Ps-HppE被确定在翻译后通过假定活性位点酪氨酸(Tyr95)的羟基化进行修饰。使用NO作为自旋探针和分子氧替代物通过电子顺磁共振光谱对Fe(II)中心进行分析,结果表明Ps-HppE的金属中心与Sw-HppE的相似但不相同。通过测量初级氘动力学效应确定了(S)-HPP和(R)-HPP反应的速率决定步骤的特征,并将这些结果与密度泛函理论计算相关联。有趣的是,对于Ps-HppE和Sw-HppE,使用非生理性底物(R)-HPP的反应比使用(S)-HPP的反应快1.9倍。这可能是由于各自反应中被夺取氢原子的键解离能存在差异。因此,尽管氨基酸序列同一性水平较低,但Ps-HppE是Sw-HppE的紧密模拟物,代表了一种非血红素铁依赖性酶能够催化仲醇脱氢形成新的C-O键的第二个例子。

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