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β-α-β折叠的化学多功能性:互变异构酶超家族中的催化多效性与趋异进化

The chemical versatility of the beta-alpha-beta fold: catalytic promiscuity and divergent evolution in the tautomerase superfamily.

作者信息

Poelarends G J, Veetil V Puthan, Whitman C P

机构信息

Department of Pharmaceutical Biology, Groningen Research Institute of Pharmacy, University of Groningen, Groningen, Netherlands.

出版信息

Cell Mol Life Sci. 2008 Nov;65(22):3606-18. doi: 10.1007/s00018-008-8285-x.

DOI:10.1007/s00018-008-8285-x
PMID:18695941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2930816/
Abstract

Tautomerase superfamily members have an amino-terminal proline and a beta-alpha-beta fold, and include 4-oxalocrotonate tautomerase (4-OT), 5-(carboxymethyl)-2-hydroxymuconate isomerase (CHMI), trans- and cis-3-chloroacrylic acid dehalogenase (CaaD and cis-CaaD, respectively), malonate semialdehyde decarboxylase (MSAD), and macrophage migration inhibitory factor (MIF), which exhibits a phenylpyruvate tautomerase (PPT) activity. Pro-1 is a base (4-OT, CHMI, the PPT activity of MIF) or an acid (CaaD, cis-CaaD, MSAD). Components of the catalytic machinery have been identified and mechanistic hypotheses formulated. Characterization of new homologues shows that these mechanisms are incomplete. 4-OT, CaaD, cis-CaaD, and MSAD also have promiscuous activities with a hydratase activity in CaaD, cis-CaaD, and MSAD, PPT activity in CaaD and cis-CaaD, and CaaD and cis-CaaD activities in 4-OT. The shared promiscuous activities provide evidence for divergent evolution from a common ancestor, give hints about mechanistic relationships, and implicate catalytic promiscuity in the emergence of new enzymes.

摘要

互变异构酶超家族成员具有一个氨基末端脯氨酸和一个β-α-β折叠结构,包括4-草酰巴豆酸互变异构酶(4-OT)、5-(羧甲基)-2-羟基粘康酸异构酶(CHMI)、反式和顺式3-氯丙烯酸脱卤酶(分别为CaaD和顺式-CaaD)、丙二酸半醛脱羧酶(MSAD)以及巨噬细胞迁移抑制因子(MIF),后者具有苯丙酮酸互变异构酶(PPT)活性。Pro-1在某些成员中是一种碱(4-OT、CHMI、MIF的PPT活性)或酸(CaaD、顺式-CaaD、MSAD)。催化机制的组成部分已被确定,并提出了机制假说。新同源物的表征表明这些机制并不完整。4-OT、CaaD、顺式-CaaD和MSAD还具有混杂活性,其中CaaD、顺式-CaaD和MSAD具有水合酶活性,CaaD和顺式-CaaD具有PPT活性,4-OT具有CaaD和顺式-CaaD活性。这些共享的混杂活性为从共同祖先的趋异进化提供了证据,暗示了机制关系,并表明催化混杂在新酶的出现中起作用。

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