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2
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本文引用的文献

1
Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection.预测公共卫生监测中的疫情发现:进行定量分析以实现基于证据的方法选择。
AMIA Annu Symp Proc. 2008 Nov 6;2008:76-80.
2
Updated guidelines for evaluating public health surveillance systems: recommendations from the Guidelines Working Group.《公共卫生监测系统评估更新指南:指南工作组的建议》
MMWR Recomm Rep. 2001 Jul 27;50(RR-13):1-35; quiz CE1-7.
3
Recombinant temporal aberration detection algorithms for enhanced biosurveillance.用于增强生物监测的重组时间偏差检测算法
J Am Med Inform Assoc. 2008 Jan-Feb;15(1):77-86. doi: 10.1197/jamia.M2587. Epub 2007 Oct 18.
4
Automated time series forecasting for biosurveillance.用于生物监测的自动化时间序列预测
Stat Med. 2007 Sep 30;26(22):4202-18. doi: 10.1002/sim.2835.
5
A simulation study comparing aberration detection algorithms for syndromic surveillance.一项比较用于症状监测的像差检测算法的模拟研究。
BMC Med Inform Decis Mak. 2007 Mar 1;7:6. doi: 10.1186/1472-6947-7-6.
6
Outbreak detection through automated surveillance: a review of the determinants of detection.通过自动监测进行疫情检测:检测决定因素综述
J Biomed Inform. 2007 Aug;40(4):370-9. doi: 10.1016/j.jbi.2006.09.003. Epub 2006 Oct 5.
7
Assessing surveillance using sensitivity, specificity and timeliness.使用敏感性、特异性和及时性评估监测。
Stat Methods Med Res. 2006 Oct;15(5):445-64. doi: 10.1177/0962280206071641.
8
Comparing aberration detection methods with simulated data.使用模拟数据比较像差检测方法。
Emerg Infect Dis. 2005 Feb;11(2):314-6. doi: 10.3201/eid1102.040587.
9
Bio-ALIRT biosurveillance detection algorithm evaluation.生物-ALIRT生物监测检测算法评估
MMWR Suppl. 2004 Sep 24;53:152-8.
10
BioSense--a national initiative for early detection and quantification of public health emergencies.生物传感——一项用于早期发现和量化公共卫生突发事件的全国性倡议。
MMWR Suppl. 2004 Sep 24;53:53-5.

理解公共卫生监测中的检测性能:异常检测算法建模

Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms.

作者信息

Buckeridge David L, Okhmatovskaia Anna, Tu Samson, O'Connor Martin, Nyulas Csongor, Musen Mark A

机构信息

Department of Epidemiology and Biostatistics, McGill University, Montreal, Canada.

出版信息

J Am Med Inform Assoc. 2008 Nov-Dec;15(6):760-9. doi: 10.1197/jamia.M2799. Epub 2008 Aug 28.

DOI:10.1197/jamia.M2799
PMID:18755992
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2585528/
Abstract

OBJECTIVE

Statistical aberrancy-detection algorithms play a central role in automated public health systems, analyzing large volumes of clinical and administrative data in real-time with the goal of detecting disease outbreaks rapidly and accurately. Not all algorithms perform equally well in terms of sensitivity, specificity, and timeliness in detecting disease outbreaks and the evidence describing the relative performance of different methods is fragmented and mainly qualitative.

DESIGN

We developed and evaluated a unified model of aberrancy-detection algorithms and a software infrastructure that uses this model to conduct studies to evaluate detection performance. We used a task-analytic methodology to identify the common features and meaningful distinctions among different algorithms and to provide an extensible framework for gathering evidence about the relative performance of these algorithms using a number of evaluation metrics. We implemented our model as part of a modular software infrastructure (Biological Space-Time Outbreak Reasoning Module, or BioSTORM) that allows configuration, deployment, and evaluation of aberrancy-detection algorithms in a systematic manner.

MEASUREMENT

We assessed the ability of our model to encode the commonly used EARS algorithms and the ability of the BioSTORM software to reproduce an existing evaluation study of these algorithms.

RESULTS

Using our unified model of aberrancy-detection algorithms, we successfully encoded the EARS algorithms, deployed these algorithms using BioSTORM, and were able to reproduce and extend previously published evaluation results.

CONCLUSION

The validated model of aberrancy-detection algorithms and its software implementation will enable principled comparison of algorithms, synthesis of results from evaluation studies, and identification of surveillance algorithms for use in specific public health settings.

摘要

目的

统计异常检测算法在自动化公共卫生系统中发挥着核心作用,实时分析大量临床和管理数据,旨在快速准确地检测疾病暴发。并非所有算法在检测疾病暴发的敏感性、特异性和及时性方面都表现得同样出色,且描述不同方法相对性能的证据零散且主要是定性的。

设计

我们开发并评估了一个异常检测算法统一模型以及一个使用该模型进行研究以评估检测性能的软件基础设施。我们采用任务分析方法来识别不同算法之间的共同特征和有意义的区别,并提供一个可扩展框架,以便使用多种评估指标收集有关这些算法相对性能的证据。我们将模型作为模块化软件基础设施(生物时空暴发推理模块,即BioSTORM)的一部分来实现,该基础设施允许以系统方式配置、部署和评估异常检测算法。

测量

我们评估了模型对常用EARS算法进行编码的能力以及BioSTORM软件重现这些算法现有评估研究的能力。

结果

使用我们的异常检测算法统一模型,我们成功对EARS算法进行了编码,使用BioSTORM部署了这些算法,并能够重现和扩展先前发表的评估结果。

结论

经过验证的异常检测算法模型及其软件实现将能够对算法进行有原则的比较、综合评估研究结果,并识别适用于特定公共卫生环境的监测算法。