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无脊椎动物巨型血红蛋白的异向和同向相互作用的结构基础。

Structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin.

作者信息

Numoto Nobutaka, Nakagawa Taro, Kita Akiko, Sasayama Yuichi, Fukumori Yoshihiro, Miki Kunio

机构信息

Department of Chemistry, Graduate School of Science, Kyoto UniVersity, Sakyo-ku, Kyoto 606-8502, Japan.

出版信息

Biochemistry. 2008 Oct 28;47(43):11231-8. doi: 10.1021/bi8012609. Epub 2008 Oct 4.

Abstract

The oxygen binding properties of extracellular giant hemoglobins (Hbs) in some annelids exhibit features significantly different from those of vertebrate tetrameric Hbs. Annelid giant Hbs show cooperative oxygen binding properties in the presence of inorganic cations, while the cooperativities of vertebrate Hbs are enhanced by small organic anions or chloride ions. To elucidate the structural basis for the cation-mediated cooperative mechanisms of these giant Hbs, we determined the crystal structures of Ca2+- and Mg2+-bound Hbs from Oligobrachia mashikoi at 1.6 and 1.7 A resolution, respectively. Both of the metal-bound structures were determined in the oxygenated state. Four Ca2+-binding sites and one Mg2+-binding site were identified in each tetramer subassembly. These cations are considered to stabilize the oxygenated form and increase affinity and cooperativity for oxygen binding, as almost all of the Ca2+ and Mg2+ cations were bound at the interface regions, forming either direct or hydrogen bond-mediated interactions with the neighboring subunits. A comparison of the structures of the oxygenated form and the partially unliganded form provides structural insight into proton-coupled cooperativity (Bohr effect) and ligand-induced transitions. Two histidine residues are assumed to be primarily associated with the Bohr effect. With regard to the ligand-induced cooperativity, a novel quaternary rotation mechanism is proposed to exist at the interface region of the dimer subassembly. Interactions among conserved residues Arg E10, His F3, Gln F7, and Val E11, together with the bending motion of the heme molecules, appear to be essential for quaternary rearrangement.

摘要

一些环节动物细胞外巨型血红蛋白(Hb)的氧结合特性表现出与脊椎动物四聚体Hb显著不同的特征。环节动物巨型Hb在无机阳离子存在下表现出协同氧结合特性,而脊椎动物Hb的协同性则通过小的有机阴离子或氯离子增强。为了阐明这些巨型Hb阳离子介导的协同机制的结构基础,我们分别以1.6 Å和1.7 Å的分辨率测定了来自真枝吻纽虫的Ca2+和Mg2+结合Hb的晶体结构。两种金属结合结构均在氧合状态下测定。在每个四聚体亚基中鉴定出四个Ca2+结合位点和一个Mg2+结合位点。这些阳离子被认为可稳定氧合形式并增加对氧结合的亲和力和协同性,因为几乎所有的Ca2+和Mg2+阳离子都结合在界面区域,与相邻亚基形成直接或氢键介导的相互作用。氧合形式和部分未结合配体形式的结构比较为质子偶联协同性(玻尔效应)和配体诱导的转变提供了结构上的见解。假定两个组氨酸残基主要与玻尔效应有关。关于配体诱导的协同性,提出在二聚体亚基的界面区域存在一种新的四级旋转机制。保守残基Arg E10、His F3、Gln F7和Val E11之间的相互作用,以及血红素分子的弯曲运动,似乎对四级重排至关重要。

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