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原核生物基因组中的进化模式。

Evolutionary patterns in prokaryotic genomes.

作者信息

Rocha Eduardo Pc

机构信息

UPMC Univ Paris 06, Atelier de BioInformatique, F-75005 Paris, France.

出版信息

Curr Opin Microbiol. 2008 Oct;11(5):454-60. doi: 10.1016/j.mib.2008.09.007. Epub 2008 Oct 15.

Abstract

Prokaryotic genomics is shifting towards comparative approaches to unravel how and why genomes change over time. Both phylogenetic and population genetics approaches are required to dissect the relative roles of selection and drift under these conditions. Lineages evolve adaptively by selection of changes in extant genomes and the way this occurs is being explored from a systemic and evolutionary perspective to understand how mutations relate with gene repertoire changes and how both are contextualized in cellular networks. Through an increased appreciation of genome dynamics in given ecological contexts, a more detailed picture of the genetic basis of prokaryotic evolution is emerging.

摘要

原核生物基因组学正朝着比较方法转变,以揭示基因组如何以及为何随时间变化。在这些情况下,需要系统发育和群体遗传学方法来剖析选择和漂变的相对作用。谱系通过选择现存基因组中的变化进行适应性进化,并且正在从系统和进化的角度探索这种变化发生的方式,以了解突变如何与基因库变化相关联,以及两者如何在细胞网络中相互关联。通过更深入地了解特定生态环境中的基因组动态,原核生物进化的遗传基础正逐渐呈现出更详细的图景。

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