Suppr超能文献

聚氧乙烯水溶液的建模。2. 介观模拟。

Modeling of aqueous poly(oxyethylene) solutions. 2. Mesoscale simulations.

作者信息

Fischer Jan, Paschek Dietmar, Geiger Alfons, Sadowski Gabriele

机构信息

Laboratory of Thermodynamics, Dortmund University of Technology, 44221 Dortmund, Germany.

出版信息

J Phys Chem B. 2008 Oct 30;112(43):13561-71. doi: 10.1021/jp805770q. Epub 2008 Oct 8.

Abstract

We extend our work on aqueous solutions of poly(oxyethylene) oligomers H-(CH2-O-CH2)n -H (POEn). On the basis of atomistic simulations of trimer and decamer solutions (first part of this series of papers), different sets of coarse-grained implicit-solvent potentials have been constructed using the iterative Boltzmann inversion technique. The comparison of structures obtained from coarse-grained simulations (gyration radii, end-to-end distances, radial distribution functions) with atomistic reference simulations and experiments shows that the state-specific potentials are transferable both to a wide concentration range, if the same molecule size is considered, and to at least 2 orders of magnitude larger molecules (in terms of molecular mass). Comparing the performance of different mesoscale potentials, we find different applicability ranges in terms of molecule sizes. The experimental gyration radii for chains comprising up to 1500 monomers are reproduced almost quantitatively by the decamer-fitted potentials with dihedral interactions included. The trimer-fitted potentials reproduce experimental chain dimensions of up to some hundred monomers but seem to become metastable beyond a certain chain length, as we evidenced some chain collapses. Relaxation of large-scale features is 1-2 orders of magnitude faster in the mesoscale simulations than in the atomistic simulations. The diffusion behavior in dependence of concentration is captured correctly when the decamer potential is applied to the decamer itself. For all other chain lengths, we find that time mapping from coarse-grained to atomistic trajectories has to be determined separately for each concentration. Overall, diffusion is 1-2 orders of magnitude faster on the mesoscale, depending considerably on the Lowe-Andersen thermostat parameters. The CG simulations provide an overall speed-up of about 3 orders of magnitude.

摘要

我们扩展了关于聚(氧乙烯)低聚物H-(CH₂-O-CH₂)ₙ -H(POEn)水溶液的研究工作。基于三聚体和十聚体溶液的原子模拟(本系列论文的第一部分),利用迭代玻尔兹曼反演技术构建了不同组的粗粒化隐式溶剂势。将粗粒化模拟得到的结构(回转半径、端到端距离、径向分布函数)与原子参考模拟和实验结果进行比较表明,如果考虑相同的分子大小,特定状态的势在很宽的浓度范围内都是可转移的,并且对于至少大两个数量级的分子(就分子量而言)也是如此。比较不同中尺度势的性能,我们发现它们在分子大小方面有不同的适用范围。对于包含多达1500个单体的链,包含二面角相互作用的十聚体拟合势几乎能定量再现实验回转半径。三聚体拟合势能再现多达几百个单体的实验链尺寸,但在超过一定链长后似乎会变得亚稳,因为我们观察到了一些链的塌缩。中尺度模拟中大规模特征的弛豫比原子模拟快1 - 2个数量级。当将十聚体势应用于十聚体本身时,能正确捕捉浓度依赖的扩散行为。对于所有其他链长,我们发现必须针对每个浓度分别确定从粗粒化轨迹到原子轨迹的时间映射。总体而言,中尺度上的扩散速度快1 - 2个数量级,这在很大程度上取决于Lowe-Andersen恒温器参数。粗粒化模拟总体上加速了约3个数量级。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验