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羧肽酶A催化苯甲酰甘氨酰苯乳酸水解中的构象动力学和溶剂粘度效应

Conformational dynamics and solvent viscosity effects in carboxypeptidase-A-catalyzed benzoylglycylphenyllactate hydrolysis.

作者信息

Goguadze N G, Hammerstad-Pedersen J M, Khoshtariya D E, Ulstrup J

机构信息

Institute of Inorganic Chemistry and Electrochemistry, Georgian Academy of Sciences, Tbilisi, USSR.

出版信息

Eur J Biochem. 1991 Sep 1;200(2):423-9. doi: 10.1111/j.1432-1033.1991.tb16200.x.

Abstract

We have used a new approach to the dynamics of hydrolytic metalloenzyme catalysis based on investigations of both external solvent viscosity effects and kinetic 2H isotope effects. The former reflects solvent and protein dynamics, and the nuclear reorganization distribution among damped protein motion and intramolecular friction-free nuclear motion. The isotope effect represents proton tunnelling and reorganization in the hydrogen bond network around the active site. We illustrate the approach by new spectrophotometric and pH-titration data for carboxypeptidase-A-catalyzed benzoylglycyl-L-phenyllactate hydrolysis. This substrate exhibits both a significant inverse fractional power law viscosity dependence over wide ranges controlled by glycerol and sucrose, and a kinetic 2H isotope effect of 1.65. The analogous benzoylglycylphenylalanine hydrolysis has a smaller isotope effect (1.3) and no viscosity dependence. Viscosity variation has no effect on the CD spectra in the 180-240-nm range. In terms of stochastic chemical rate theory, the data correspond to an enzyme-peptide substrate complex with a 'tight' structure protected from the solvent. In comparison, the enzyme-ester substrate complex is 'softer', strongly coupled to the solvent, and the rate-determining step is accompanied by proton transfer or by substantial reorganization in the hydrogen bonds near the active site.

摘要

我们基于对外部溶剂粘度效应和动力学2H同位素效应的研究,采用了一种新的方法来研究水解金属酶催化的动力学。前者反映了溶剂和蛋白质的动力学,以及在阻尼蛋白质运动和分子内无摩擦核运动之间的核重组分布。同位素效应代表了活性位点周围氢键网络中的质子隧穿和重组。我们通过新的分光光度法和pH滴定数据来说明这种方法,这些数据是关于羧肽酶A催化苯甲酰甘氨酰-L-苯基乳酸水解的。这种底物在由甘油和蔗糖控制的宽范围内都表现出显著的反分数幂律粘度依赖性,以及1.65的动力学2H同位素效应。类似的苯甲酰甘氨酰苯丙氨酸水解具有较小的同位素效应(1.3)且没有粘度依赖性。粘度变化对180 - 240nm范围内的圆二色光谱没有影响。根据随机化学速率理论,这些数据对应于一种具有“紧密”结构且免受溶剂影响的酶 - 肽底物复合物。相比之下,酶 - 酯底物复合物“较软”,与溶剂强烈耦合,并且速率决定步骤伴随着质子转移或活性位点附近氢键的大量重组。

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