Konopka Michael C, Sochacki Kem A, Bratton Benjamin P, Shkel Irina A, Record M Thomas, Weisshaar James C
Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
J Bacteriol. 2009 Jan;191(1):231-7. doi: 10.1128/JB.00536-08. Epub 2008 Oct 24.
Facile diffusion of globular proteins within a cytoplasm that is dense with biopolymers is essential to normal cellular biochemical activity and growth. Remarkably, Escherichia coli grows in minimal medium over a wide range of external osmolalities (0.03 to 1.8 osmol). The mean cytoplasmic biopolymer volume fraction ((phi)) for such adapted cells ranges from 0.16 at 0.10 osmol to 0.36 at 1.45 osmol. For cells grown at 0.28 osmol, a similar phi range is obtained by plasmolysis (sudden osmotic upshift) using NaCl or sucrose as the external osmolyte, after which the only available cellular response is passive loss of cytoplasmic water. Here we measure the effective axial diffusion coefficient of green fluorescent protein (D(GFP)) in the cytoplasm of E. coli cells as a function of (phi) for both plasmolyzed and adapted cells. For plasmolyzed cells, the median D(GFP) (D(GFP)(m)) decreases by a factor of 70 as (phi) increases from 0.16 to 0.33. In sharp contrast, for adapted cells, D(GFP)(m) decreases only by a factor of 2.1 as (phi) increases from 0.16 to 0.36. Clearly, GFP diffusion is not determined by (phi) alone. By comparison with quantitative models, we show that the data cannot be explained by crowding theory. We suggest possible underlying causes of this surprising effect and further experiments that will help choose among competing hypotheses. Recovery of the ability of proteins to diffuse in the cytoplasm after plasmolysis may well be a key determinant of the time scale of the recovery of growth.
球状蛋白质在充满生物聚合物的细胞质中能轻松扩散,这对正常的细胞生化活动和生长至关重要。值得注意的是,大肠杆菌能在广泛的外部渗透压范围(0.03至1.8渗透压)的基本培养基中生长。这类适应后的细胞的平均细胞质生物聚合物体积分数((phi))范围从0.10渗透压下的0.16到1.45渗透压下的0.36。对于在0.28渗透压下生长的细胞,通过使用NaCl或蔗糖作为外部渗透剂进行质壁分离(突然的渗透压升高)可获得类似的(phi)范围,在此之后,细胞唯一可用的反应是细胞质水的被动流失。在这里,我们测量了绿色荧光蛋白(D(GFP))在大肠杆菌细胞质中的有效轴向扩散系数,它是质壁分离细胞和适应细胞的(phi)的函数。对于质壁分离细胞,随着(phi)从0.16增加到0.33,D(GFP)的中位数(D(GFP)(m))降低了70倍。形成鲜明对比的是,对于适应细胞,随着(phi)从0.16增加到0.36,D(GFP)(m)仅降低了2.1倍。显然,GFP的扩散并非仅由(phi)决定。通过与定量模型比较,我们表明这些数据无法用拥挤理论来解释。我们提出了这种惊人效应可能的潜在原因以及有助于在相互竞争的假设中做出选择的进一步实验。质壁分离后蛋白质在细胞质中扩散能力的恢复很可能是生长恢复时间尺度的关键决定因素。