• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

2009年的基因本体注释(GOA)数据库——一个整合的基因本体注释资源。

The GOA database in 2009--an integrated Gene Ontology Annotation resource.

作者信息

Barrell Daniel, Dimmer Emily, Huntley Rachael P, Binns David, O'Donovan Claire, Apweiler Rolf

机构信息

Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

出版信息

Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. doi: 10.1093/nar/gkn803. Epub 2008 Oct 27.

DOI:10.1093/nar/gkn803
PMID:18957448
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2686469/
Abstract

The Gene Ontology Annotation (GOA) project at the EBI (http://www.ebi.ac.uk/goa) provides high-quality electronic and manual associations (annotations) of Gene Ontology (GO) terms to UniProt Knowledgebase (UniProtKB) entries. Annotations created by the project are collated with annotations from external databases to provide an extensive, publicly available GO annotation resource. Currently covering over 160 000 taxa, with greater than 32 million annotations, GOA remains the largest and most comprehensive open-source contributor to the GO Consortium (GOC) project. Over the last five years, the group has augmented the number and coverage of their electronic pipelines and a number of new manual annotation projects and collaborations now further enhance this resource. A range of files facilitate the download of annotations for particular species, and GO term information and associated annotations can also be viewed and downloaded from the newly developed GOA QuickGO tool (http://www.ebi.ac.uk/QuickGO), which allows users to precisely tailor their annotation set.

摘要

欧洲生物信息研究所(EBI)的基因本体注释(GOA)项目(http://www.ebi.ac.uk/goa)为通用蛋白质知识库(UniProtKB)条目提供了高质量的电子和人工关联(注释)的基因本体(GO)术语。该项目创建的注释与来自外部数据库的注释进行整理,以提供一个广泛的、公开可用的GO注释资源。目前涵盖超过16万个分类单元,拥有超过3200万个注释,GOA仍然是基因本体联盟(GOC)项目中最大且最全面的开源贡献者。在过去五年中,该团队增加了其电子流程的数量和覆盖范围,并且一些新的人工注释项目和合作现在进一步增强了这一资源。一系列文件便于下载特定物种的注释,并且GO术语信息和相关注释也可以从新开发的GOA QuickGO工具(http://www.ebi.ac.uk/QuickGO)中查看和下载,该工具允许用户精确定制他们的注释集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/4e5c7c337519/gkn803f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/ba7e86aedc4e/gkn803f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/610d528ecd5e/gkn803f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/4e5c7c337519/gkn803f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/ba7e86aedc4e/gkn803f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/610d528ecd5e/gkn803f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0059/2686469/4e5c7c337519/gkn803f3.jpg

相似文献

1
The GOA database in 2009--an integrated Gene Ontology Annotation resource.2009年的基因本体注释(GOA)数据库——一个整合的基因本体注释资源。
Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. doi: 10.1093/nar/gkn803. Epub 2008 Oct 27.
2
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.基因本体注释(GOA)数据库:在UniProt中与基因本体共享知识。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6. doi: 10.1093/nar/gkh021.
3
The GOA database: gene Ontology annotation updates for 2015.基因本体注释数据库(GOA):2015年基因本体注释更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D1057-63. doi: 10.1093/nar/gku1113. Epub 2014 Nov 6.
4
The UniProt-GO Annotation database in 2011.2011 年的 UniProt-GO Annotation 数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D565-70. doi: 10.1093/nar/gkr1048. Epub 2011 Nov 28.
5
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.对生物创意(BioCreAtIvE)和基因本体注释(GOA)的基因本体(GO)注释检索的评估。
BMC Bioinformatics. 2005;6 Suppl 1(Suppl 1):S17. doi: 10.1186/1471-2105-6-S1-S17. Epub 2005 May 24.
6
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.基因本体论注释(GOA)项目:基因本体论在SWISS-PROT、TrEMBL和InterPro中的实施。
Genome Res. 2003 Apr;13(4):662-72. doi: 10.1101/gr.461403. Epub 2003 Mar 12.
7
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.利用基因本体论注释理解人类过氧化物酶体蛋白质组。
Database (Oxford). 2013 Jan 17;2013:bas062. doi: 10.1093/database/bas062. Print 2013.
8
Gene Ontology annotations at SGD: new data sources and annotation methods.SGD 中的基因本体注释:新数据源与注释方法
Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. doi: 10.1093/nar/gkm909. Epub 2007 Nov 3.
9
QuickGO: a web-based tool for Gene Ontology searching.QuickGO:一个基于网络的基因本体论搜索工具。
Bioinformatics. 2009 Nov 15;25(22):3045-6. doi: 10.1093/bioinformatics/btp536. Epub 2009 Sep 10.
10
QuickGO: a user tutorial for the web-based Gene Ontology browser.QuickGO:基于网络的基因本体浏览器用户指南
Database (Oxford). 2009;2009:bap010. doi: 10.1093/database/bap010. Epub 2009 Sep 29.

引用本文的文献

1
A multi-objective evolutionary algorithm for detecting protein complexes in PPI networks using gene ontology.一种利用基因本体在蛋白质-蛋白质相互作用网络中检测蛋白质复合物的多目标进化算法。
Sci Rep. 2025 May 15;15(1):16855. doi: 10.1038/s41598-025-01667-y.
2
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet.在饲喂富含多不饱和脂肪酸补充日粮的猪肝脏转录组中鉴定与性状相关的微小RNA模块。
J Appl Genet. 2025 May;66(2):389-407. doi: 10.1007/s13353-024-00912-w. Epub 2024 Nov 15.
3
GOTermViewer: Visualization of Gene Ontology Enrichment in Multiple Differential Gene Expression Analyses.

本文引用的文献

1
Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?心血管基因本体注释计划第一年报告:为何是心血管基因本体?
Proteomics. 2008 May;8(10):1950-3. doi: 10.1002/pmic.200800078.
2
Use and misuse of the gene ontology annotations.基因本体注释的使用与误用。
Nat Rev Genet. 2008 Jul;9(7):509-15. doi: 10.1038/nrg2363. Epub 2008 May 13.
3
Gene Ontology annotations: what they mean and where they come from.基因本体论注释:它们的含义及来源
基因本体术语查看器:多种差异基因表达分析中基因本体富集的可视化
Bioinform Biol Insights. 2024 Sep 18;18:11779322241271550. doi: 10.1177/11779322241271550. eCollection 2024.
4
A comprehensive review and comparison of existing computational methods for protein function prediction.蛋白质功能预测现有计算方法的综合回顾与比较。
Brief Bioinform. 2024 May 23;25(4). doi: 10.1093/bib/bbae289.
5
Conjoint Analysis of Genome-Wide lncRNA and mRNA Expression during the Salicylic Acid Response in .水杨酸应答过程中全基因组lncRNA和mRNA表达的联合分析
Plants (Basel). 2023 Mar 20;12(6):1377. doi: 10.3390/plants12061377.
6
The Pharmacorank Search Tool for the Retrieval of Prioritized Protein Drug Targets and Drug Repositioning Candidates According to Selected Diseases.根据选定疾病检索优先蛋白药物靶点和药物重定位候选物的 Pharmacorank 搜索工具。
Biomolecules. 2022 Oct 26;12(11):1559. doi: 10.3390/biom12111559.
7
Heterogeneous network propagation with forward similarity integration to enhance drug-target association prediction.具有正向相似性整合的异构网络传播以增强药物-靶点关联预测
PeerJ Comput Sci. 2022 Oct 11;8:e1124. doi: 10.7717/peerj-cs.1124. eCollection 2022.
8
A systematic assessment of cell type deconvolution algorithms for DNA methylation data.基于 DNA 甲基化数据的细胞类型去卷积算法的系统评估
Brief Bioinform. 2022 Nov 19;23(6). doi: 10.1093/bib/bbac449.
9
Genome-wide DNA methylation profiles and small noncoding RNA signatures in sperm with a high DNA fragmentation index.精子中高 DNA 碎片化指数的全基因组 DNA 甲基化谱和小非编码 RNA 特征。
J Assist Reprod Genet. 2022 Oct;39(10):2255-2274. doi: 10.1007/s10815-022-02618-6. Epub 2022 Oct 3.
10
Proteomic Exploration of Porcine Oocytes During Meiotic Maturation Using an Accurate TMT-Based Quantitative Approach.采用基于TMT的精确定量方法对猪卵母细胞减数分裂成熟过程进行蛋白质组学探索
Front Vet Sci. 2022 Feb 7;8:792869. doi: 10.3389/fvets.2021.792869. eCollection 2021.
BMC Bioinformatics. 2008 Apr 29;9 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2105-9-S5-S2.
4
The universal protein resource (UniProt).通用蛋白质资源(UniProt)。
Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. doi: 10.1093/nar/gkm895. Epub 2007 Nov 27.
5
Ensembl 2008.Ensembl 2008。
Nucleic Acids Res. 2008 Jan;36(Database issue):D707-14. doi: 10.1093/nar/gkm988. Epub 2007 Nov 13.
6
Ontology annotation: mapping genomic regions to biological function.本体注释:将基因组区域映射到生物学功能。
Curr Opin Chem Biol. 2007 Feb;11(1):4-11. doi: 10.1016/j.cbpa.2006.11.039. Epub 2007 Jan 5.
7
New developments in the InterPro database.InterPro数据库的新进展。
Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8. doi: 10.1093/nar/gkl841.
8
Get ready to GO! A biologist's guide to the Gene Ontology.准备出发!基因本体论的生物学家指南。
Brief Bioinform. 2005 Sep;6(3):298-304. doi: 10.1093/bib/6.3.298.
9
The International Protein Index: an integrated database for proteomics experiments.国际蛋白质索引:蛋白质组学实验的综合数据库。
Proteomics. 2004 Jul;4(7):1985-8. doi: 10.1002/pmic.200300721.
10
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.基因本体注释(GOA)数据库:在UniProt中与基因本体共享知识。
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6. doi: 10.1093/nar/gkh021.