Suppr超能文献

FMA-RadLex:一种源自解剖学参考本体基础模型的放射解剖学应用本体。

FMA-RadLex: An application ontology of radiological anatomy derived from the foundational model of anatomy reference ontology.

作者信息

Mejino Jose L V, Rubin Daniel L, Brinkley James F

机构信息

Structural Informatics Group,University of Washington, USA.

出版信息

AMIA Annu Symp Proc. 2008 Nov 6;2008:465-9.

Abstract

Domain reference ontologies are being developed to serve as generalizable and reusable sources designed to support any application specific to the domain. The challenge is how to develop ways to derive or adapt pertinent portions of reference ontologies into application ontologies. In this paper we demonstrate how a subset of anatomy relevant to the domain of radiology can be derived from an anatomy reference ontology, the Foundational Model of Anatomy (FMA) Ontology, to create an application ontology that is robust and expressive enough to incorporate and accommodate all salient anatomical knowledge necessary to support existing and emerging systems for managing anatomical information related to radiology. The principles underlying this work are applicable to domains beyond radiology, so our results could be extended to other areas of biomedicine in the future.

摘要

领域参考本体正在被开发,以作为可通用和可重用的资源,旨在支持特定领域的任何应用程序。挑战在于如何开发方法,将参考本体的相关部分派生或改编为应用本体。在本文中,我们展示了如何从解剖学参考本体——基础解剖模型(FMA)本体中派生出与放射学领域相关的解剖学子集,以创建一个应用本体,该本体强大且富有表现力,足以纳入并容纳支持现有和新兴系统管理与放射学相关的解剖学信息所需的所有重要解剖学知识。这项工作的基本原理适用于放射学以外的领域,因此我们的结果未来可能会扩展到生物医学的其他领域。

相似文献

2
Generating application ontologies from reference ontologies.
AMIA Annu Symp Proc. 2008 Nov 6;2008:672-6.
3
Desiderata for domain reference ontologies in biomedicine.
J Biomed Inform. 2006 Jun;39(3):307-13. doi: 10.1016/j.jbi.2005.09.002. Epub 2005 Oct 17.
4
A reference ontology for biomedical informatics: the Foundational Model of Anatomy.
J Biomed Inform. 2003 Dec;36(6):478-500. doi: 10.1016/j.jbi.2003.11.007.
5
The qualitative and time-dependent character of spatial relations in biomedical ontologies.
Bioinformatics. 2007 Jul 1;23(13):1674-82. doi: 10.1093/bioinformatics/btm155. Epub 2007 Apr 26.
6
The Foundational Model of Anatomy in OWL 2 and its use.
Artif Intell Med. 2013 Feb;57(2):119-32. doi: 10.1016/j.artmed.2012.11.002. Epub 2012 Dec 28.
7
From frames to OWL2: Converting the Foundational Model of Anatomy.
Artif Intell Med. 2016 May;69:12-21. doi: 10.1016/j.artmed.2016.04.003. Epub 2016 Apr 27.
8
Developing biomedical ontologies collaboratively.
AMIA Annu Symp Proc. 2008 Nov 6;2008:520-4.
9
Comparing image search behaviour in the ARRS GoldMiner search engine and a clinical PACS/RIS.
J Biomed Inform. 2015 Aug;56:57-64. doi: 10.1016/j.jbi.2015.04.013. Epub 2015 May 19.

引用本文的文献

1
Natural Language Processing Model for Identifying Critical Findings-A Multi-Institutional Study.
J Digit Imaging. 2023 Feb;36(1):105-113. doi: 10.1007/s10278-022-00712-w. Epub 2022 Nov 7.
2
[Artificial intelligence in medicine and gynecology-the wrong track or promise of cure?].
Gynakologe. 2021;54(7):476-482. doi: 10.1007/s00129-021-04808-2. Epub 2021 May 6.
3
What is the abdomen? Rationalising clinical and anatomical perspectives using formal semantics.
J Anat. 2021 Jun;238(6):1472-1491. doi: 10.1111/joa.13384. Epub 2021 Jan 8.
5
Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods.
Int J Med Inform. 2019 Sep;129:81-87. doi: 10.1016/j.ijmedinf.2019.05.021. Epub 2019 Jun 6.
6
[Artificial intelligence in medicine-the wrong track or promise of cure?].
HNO. 2019 May;67(5):343-349. doi: 10.1007/s00106-019-0665-z.
7
Intelligent Word Embeddings of Free-Text Radiology Reports.
AMIA Annu Symp Proc. 2018 Apr 16;2017:411-420. eCollection 2017.
9
Extending XNAT Platform with an Incremental Semantic Framework.
Front Neuroinform. 2017 Aug 31;11:57. doi: 10.3389/fninf.2017.00057. eCollection 2017.

本文引用的文献

2
Creating and curating a terminology for radiology: ontology modeling and analysis.
J Digit Imaging. 2008 Dec;21(4):355-62. doi: 10.1007/s10278-007-9073-0. Epub 2007 Sep 15.
3
RadLex: a new method for indexing online educational materials.
Radiographics. 2006 Nov-Dec;26(6):1595-7. doi: 10.1148/rg.266065168.
4
Relations in biomedical ontologies.
Genome Biol. 2005;6(5):R46. doi: 10.1186/gb-2005-6-5-r46. Epub 2005 Apr 28.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验