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最小遗传与逻辑门的构建与增强

Construction and enhancement of a minimal genetic and logic gate.

作者信息

Sayut Daniel J, Niu Yan, Sun Lianhong

机构信息

Department of Chemical Engineering, University of Massachusetts Amherst, 01002, USA.

出版信息

Appl Environ Microbiol. 2009 Feb;75(3):637-42. doi: 10.1128/AEM.01684-08. Epub 2008 Dec 5.

Abstract

The ability of genetic networks to integrate multiple inputs in the generation of cellular responses is critical for the adaptation of cellular phenotype to distinct environments and of great interest in the construction of complex artificial circuits. To develop artificial genetic circuits that can integrate intercellular signaling molecules and commonly used inducing agents, we have constructed an artificial genetic AND gate based on the P(luxI) quorum-sensing promoter and the lac repressor. The hybrid promoter exhibited reduced basal and induced expression levels but increased expression capacity, generating clear logical responses that could be described using a simple mathematical model. The model also predicted that the AND gate's logic could be improved by altering the properties of the LuxR transcriptional activator and, in particular, by increasing its rate of transcriptional activation. Following these predictions, we were able to improve the AND gate's logic by approximately 1.5-fold using a LuxR mutant library generated by directed evolution, providing the first example of the use of mutant transcriptional activators to improve the logic of a complex regulatory circuit. In addition, detailed characterizations of the AND gate's responses shed light on how LuxR, LacI, and RNA polymerase interact to activate gene expression.

摘要

遗传网络在产生细胞应答过程中整合多种输入信号的能力,对于细胞表型适应不同环境至关重要,并且在构建复杂人工电路方面具有重大意义。为了开发能够整合细胞间信号分子和常用诱导剂的人工遗传电路,我们基于P(luxI)群体感应启动子和乳糖阻遏物构建了一个人工遗传与门。该杂交启动子表现出降低的基础表达水平和诱导表达水平,但增加了表达能力,产生了清晰的逻辑应答,可用一个简单的数学模型来描述。该模型还预测,通过改变LuxR转录激活因子的特性,特别是提高其转录激活速率,可以改善与门的逻辑。按照这些预测,我们利用定向进化产生的LuxR突变体文库,将与门的逻辑提高了约1.5倍,这为使用突变转录激活因子改善复杂调控电路的逻辑提供了首个实例。此外,对与门应答的详细表征揭示了LuxR、LacI和RNA聚合酶如何相互作用以激活基因表达。

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