• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用热力学模型和蒙特卡洛模拟研究糖萼在纳米载体-细胞黏附中的作用。

The Role of Glycocalyx in Nanocarrier-Cell Adhesion Investigated Using a Thermodynamic Model and Monte Carlo Simulations.

作者信息

Agrawal Neeraj J, Radhakrishnan Ravi

机构信息

Chemical and Biomolecular Engineering and Bioengineering, University of Pennsylvania, 240 Skirkanich Hall, 210 South 33rd Street, Philadelphia, Pennsylvania 19104.

出版信息

J Phys Chem C Nanomater Interfaces. 2007 Nov 1;111(43):15848-15856. doi: 10.1021/jp074514x.

DOI:10.1021/jp074514x
PMID:19081797
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2600419/
Abstract

We present an equilibrium model for quantifying the effect of glycocalyx in mediating the interaction of functionalized nanocarriers with endothelial cells. In this model, nanocarrier adhesion is governed by the interplay between three physical parameters, namely, glycocalyx resistance, flexural rigidity of receptors, and receptor-ligand bond stiffness. We describe a procedure to rationally determine the values of these crucial parameters based on several independent (single molecule and cell-based) characterizing experiments. Using our model and independent derivation of the parameter values in conjunction with Monte Carlo simulations, we describe the binding of nanocarriers to endothelial cells at equilibrium. We show that we can quantitatively reproduce the experimental binding affinities with zero fitting to binding data. Additionally, our simulations provide quantitative descriptions for the multivalency in nanocarrier binding, as well as for the degree of clustering of antigens. Our study identifies two interesting parameters: glycocalyx resistance and antigen flexural rigidity, both of which reduce binding of nanocarriers and alter the sensitivity of the nanocarrier binding constant to changes in temperature. Collectively, our model, parameter estimations, simulations, and sensitivity analyses help provide unified molecular and energetic analyses of the nanocarrier binding process.

摘要

我们提出了一个平衡模型,用于量化糖萼在介导功能化纳米载体与内皮细胞相互作用中的作用。在该模型中,纳米载体的黏附受三个物理参数之间相互作用的支配,即糖萼阻力、受体的弯曲刚度和受体 - 配体键的刚度。我们描述了一种基于几个独立的(单分子和基于细胞的)表征实验合理确定这些关键参数值的程序。使用我们的模型以及参数值的独立推导并结合蒙特卡罗模拟,我们描述了纳米载体在平衡状态下与内皮细胞的结合。我们表明,我们可以零拟合结合数据来定量重现实验结合亲和力。此外,我们的模拟为纳米载体结合中的多价性以及抗原的聚集程度提供了定量描述。我们的研究确定了两个有趣的参数:糖萼阻力和抗原弯曲刚度,这两个参数都会降低纳米载体的结合并改变纳米载体结合常数对温度变化的敏感性。总体而言,我们的模型、参数估计、模拟和敏感性分析有助于对纳米载体结合过程进行统一的分子和能量分析。

相似文献

1
The Role of Glycocalyx in Nanocarrier-Cell Adhesion Investigated Using a Thermodynamic Model and Monte Carlo Simulations.使用热力学模型和蒙特卡洛模拟研究糖萼在纳米载体-细胞黏附中的作用。
J Phys Chem C Nanomater Interfaces. 2007 Nov 1;111(43):15848-15856. doi: 10.1021/jp074514x.
2
Computational model for nanocarrier binding to endothelium validated using in vivo, in vitro, and atomic force microscopy experiments.采用体内、体外和原子力显微镜实验验证了纳米载体与内皮细胞的结合的计算模型。
Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16530-5. doi: 10.1073/pnas.1006611107. Epub 2010 Sep 7.
3
Multivalent binding of nanocarrier to endothelial cells under shear flow.纳米载体在切变流条件下与内皮细胞的多价结合。
Biophys J. 2011 Jul 20;101(2):319-26. doi: 10.1016/j.bpj.2011.05.063.
4
Modelling of Binding Free Energy of Targeted Nanocarriers to Cell Surface.靶向纳米载体与细胞表面结合自由能的建模
Heat Mass Transf. 2014 Mar 1;50(3):315-321. doi: 10.1007/s00231-013-1274-0.
5
Multiscale Modeling of Functionalized Nanocarriers in Targeted Drug Delivery.靶向给药中功能化纳米载体的多尺度建模
Curr Nanosci. 2011 Oct 1;7(5):727-735. doi: 10.2174/157341311797483826.
6
Nanocarrier Hydrodynamics and Binding in Targeted Drug Delivery: Challenges in Numerical Modeling and Experimental Validation.纳米载体在靶向给药中的流体动力学与结合:数值模拟与实验验证中的挑战
J Nanotechnol Eng Med. 2013 Feb;4(1):101011-1010115. doi: 10.1115/1.4024004. Epub 2013 Jul 11.
7
The glycocalyx promotes cooperative binding and clustering of adhesion receptors.糖萼促进黏附受体的协同结合与聚集。
Soft Matter. 2016 May 18;12(20):4572-83. doi: 10.1039/c5sm03139g.
8
Applications of Monte Carlo Simulation in Modelling of Biochemical Processes蒙特卡罗模拟在生化过程建模中的应用
9
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
10
Temporal Multiscale Approach for Nanocarrier Motion with Simultaneous Adhesion and Hydrodynamic Interactions in Targeted Drug Delivery.用于靶向药物递送中纳米载体运动的时间多尺度方法:同时考虑粘附和流体动力学相互作用
J Comput Phys. 2013 Jul 1;244:252-263. doi: 10.1016/j.jcp.2012.10.026.

引用本文的文献

1
Mechanical regulation of extracellular vesicle activity during tumour progression.肿瘤进展过程中细胞外囊泡活性的机械调节
Nat Biomed Eng. 2025 Aug 6. doi: 10.1038/s41551-025-01446-0.
2
Selective Integrin αβ Targeting through Spatially Constrained Multivalent DNA-Based Nanoparticles.通过空间受限的多价基于 DNA 的纳米粒子选择性整合素 αβ 靶向。
Molecules. 2022 Aug 4;27(15):4968. doi: 10.3390/molecules27154968.
3
Multiphysics pharmacokinetic model for targeted nanoparticles.靶向纳米颗粒的多物理场药代动力学模型
Front Med Technol. 2022 Jul 15;4:934015. doi: 10.3389/fmedt.2022.934015. eCollection 2022.
4
Understanding the Role of Endothelial Glycocalyx in Mechanotransduction via Computational Simulation: A Mini Review.通过计算模拟理解内皮糖萼在机械转导中的作用:一篇综述短文
Front Cell Dev Biol. 2021 Aug 17;9:732815. doi: 10.3389/fcell.2021.732815. eCollection 2021.
5
Multiscale modeling of protein membrane interactions for nanoparticle targeting in drug delivery.蛋白质-膜相互作用的多尺度建模及其在药物输送中靶向纳米颗粒的应用。
Curr Opin Struct Biol. 2020 Oct;64:104-110. doi: 10.1016/j.sbi.2020.06.023. Epub 2020 Jul 27.
6
Thermodynamic analysis of multivalent binding of functionalized nanoparticles to membrane surface reveals the importance of membrane entropy and nanoparticle entropy in adhesion of flexible nanoparticles.功能化纳米粒子与膜表面多价结合的热力学分析揭示了膜熵和纳米粒子熵在柔性纳米粒子黏附中的重要性。
Soft Matter. 2019 Dec 7;15(45):9271-9286. doi: 10.1039/c9sm01653h. Epub 2019 Oct 31.
7
Mechanotransmission of haemodynamic forces by the endothelial glycocalyx in a full-scale arterial model.在全尺寸动脉模型中,内皮糖萼对血流动力学力的机械传导。
R Soc Open Sci. 2019 Jun 12;6(6):190607. doi: 10.1098/rsos.190607. eCollection 2019 Jun.
8
Stiffness can mediate balance between hydrodynamic forces and avidity to impact the targeting of flexible polymeric nanoparticles in flow.刚性可以调节流体力和亲和力之间的平衡,从而影响在流动中靶向柔性聚合物纳米颗粒的效果。
Nanoscale. 2019 Apr 4;11(14):6916-6928. doi: 10.1039/c8nr09594a.
9
Multivalent Binding of a Ligand-Coated Particle: Role of Shape, Size, and Ligand Heterogeneity.配体包覆粒子的多价结合:形状、大小和配体异质性的作用。
Biophys J. 2018 Apr 24;114(8):1830-1846. doi: 10.1016/j.bpj.2018.03.007.
10
Structure and elasticity of bush and brush-like models of the endothelial glycocalyx.血管内皮糖萼的丛和刷状模型的结构和弹性。
Sci Rep. 2018 Jan 10;8(1):240. doi: 10.1038/s41598-017-18577-3.

本文引用的文献

1
'KMC-TDGL'-a coarse-grained methodology for simulating interfacial dynamics in complex fluids: application to protein-mediated membrane processes.“KMC-TDGL”——一种用于模拟复杂流体中界面动力学的粗粒度方法:应用于蛋白质介导的膜过程。
Mol Phys. 2006;104(22-24):3653-3666. doi: 10.1080/00268970600997580.
2
Shape effects of filaments versus spherical particles in flow and drug delivery.流动和药物递送中长丝与球形颗粒的形状效应
Nat Nanotechnol. 2007 Apr;2(4):249-55. doi: 10.1038/nnano.2007.70. Epub 2007 Mar 25.
3
Particle shape: a new design parameter for micro- and nanoscale drug delivery carriers.颗粒形状:微米级和纳米级药物递送载体的一个新设计参数。
J Control Release. 2007 Aug 16;121(1-2):3-9. doi: 10.1016/j.jconrel.2007.03.022. Epub 2007 Apr 11.
4
Endothelial targeting of high-affinity multivalent polymer nanocarriers directed to intercellular adhesion molecule 1.靶向细胞间黏附分子1的高亲和力多价聚合物纳米载体的内皮靶向作用
J Pharmacol Exp Ther. 2006 Jun;317(3):1161-9. doi: 10.1124/jpet.105.098970. Epub 2006 Feb 27.
5
Temperature softening of a protein in single-molecule experiments.单分子实验中蛋白质的温度软化
J Mol Biol. 2005 Nov 25;354(2):497-503. doi: 10.1016/j.jmb.2005.09.070. Epub 2005 Oct 10.
6
I-domain of lymphocyte function-associated antigen-1 mediates rolling of polystyrene particles on ICAM-1 under flow.淋巴细胞功能相关抗原-1的I结构域介导聚苯乙烯颗粒在流动状态下于细胞间黏附分子-1上滚动。
Biophys J. 2005 Nov;89(5):3577-88. doi: 10.1529/biophysj.104.057729. Epub 2005 Aug 12.
7
Targeting of antioxidant and anti-thrombotic drugs to endothelial cell adhesion molecules.将抗氧化剂和抗血栓药物靶向作用于内皮细胞粘附分子。
Curr Pharm Des. 2005;11(18):2383-401. doi: 10.2174/1381612054367274.
8
Mechanics of receptor-mediated endocytosis.受体介导的内吞作用机制。
Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9469-74. doi: 10.1073/pnas.0503879102. Epub 2005 Jun 22.
9
An electrodiffusion-filtration model for effects of endothelial surface glycocalyx on microvessel permeability to macromolecules.一种关于内皮表面糖萼对微血管大分子通透性影响的电扩散-过滤模型。
J Biomech Eng. 2004 Oct;126(5):614-24. doi: 10.1115/1.1800571.
10
Micromechanical tests of adhesion dynamics between neutrophils and immobilized ICAM-1.中性粒细胞与固定化细胞间黏附分子-1之间黏附动力学的微机械测试
Biophys J. 2004 Feb;86(2):1223-33. doi: 10.1016/S0006-3495(04)74196-X.