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从亲子鉴定案例中估算突变率。

Estimating mutation rates from paternity casework.

作者信息

Vicard P, Dawid A P, Mortera J, Lauritzen S L

机构信息

Dipartimento di Economia, Università Roma Tre, Via Silvio D'Amico 77, Roma 00145, Italy.

出版信息

Forensic Sci Int Genet. 2008 Jan;2(1):9-18. doi: 10.1016/j.fsigen.2007.07.002. Epub 2007 Oct 24.

DOI:10.1016/j.fsigen.2007.07.002
PMID:19083784
Abstract

We present a statistical methodology for making inferences about mutation rates from paternity casework. This takes account of a number of sources of potential bias, including hidden mutation, incomplete family triplets, uncertain paternity status and differing maternal and paternal mutation rates, while allowing a wide variety of mutation models. An object-oriented Bayesian network is used to facilitate computation of the likelihood function for the mutation parameters. This can process either full or summary genotypic information, both from complete putative father-mother-child triplets and from defective cases where only the child and one of its parents are observed. We use a dataset from paternity casework to illustrate the effects on inferences about mutation parameters of various types of biases and the mutation model assumed. In particular, we show that there can be relevant information in cases of unconfirmed paternity, and that excluding these, as has generally been done, can lead to biased conclusions.

摘要

我们提出了一种用于从亲子鉴定案例中推断突变率的统计方法。该方法考虑了许多潜在偏差来源,包括隐藏突变、不完整的三联体家庭、不确定的父系身份以及不同的母系和父系突变率,同时允许使用多种突变模型。使用面向对象的贝叶斯网络来促进突变参数似然函数的计算。这可以处理来自完整的推定父子 - 母子三联体以及仅观察到孩子及其父母之一的缺陷案例的完整或汇总基因型信息。我们使用亲子鉴定案例数据集来说明各种偏差类型和假设的突变模型对突变参数推断的影响。特别是,我们表明在未确认父系身份的案例中可能存在相关信息,并且像通常那样排除这些案例可能会导致有偏差的结论。

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1
Estimating mutation rates from paternity casework.从亲子鉴定案例中估算突变率。
Forensic Sci Int Genet. 2008 Jan;2(1):9-18. doi: 10.1016/j.fsigen.2007.07.002. Epub 2007 Oct 24.
2
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A statistical treatment of biases affecting the estimation of mutation rates.对影响突变率估计的偏差的统计学处理。
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[Formalisation parental genotype recognition for the computation of probability of paternity (author's transl)].用于计算父权概率的亲代基因型识别形式化(作者译)
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Object-oriented Bayesian networks for paternity cases with allelic dependencies.具有等位基因依赖性的亲子鉴定案例的面向对象贝叶斯网络
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[A new method for calculating paternity index].[一种计算父权指数的新方法]
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Do marker-based paternity assignments favour heterozygous and unrelated males?基于标记的亲子鉴定是否有利于杂合子和无亲缘关系的男性?
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Comprehensive paternity assignment: genotype, spatial location and social status in song sparrows, Melospiza Melodia.全面的亲子关系鉴定:歌雀(Melospiza Melodia)的基因型、空间位置和社会地位。
Mol Ecol. 2010 Oct;19(19):4352-64. doi: 10.1111/j.1365-294X.2010.04805.x. Epub 2010 Aug 31.

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Genes (Basel). 2024 Jan 24;15(2):150. doi: 10.3390/genes15020150.
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Estimations of Mutation Rates Depend on Population Allele Frequency Distribution: The Case of Autosomal Microsatellites.突变率的估计取决于群体等位基因频率分布:常染色体微卫星的情况。
Genes (Basel). 2022 Jul 14;13(7):1248. doi: 10.3390/genes13071248.
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Comparison of southern Chinese Han and Brazilian Caucasian mutation rates at autosomal short tandem repeat loci used in human forensic genetics.
中国南方汉族和巴西白种人常染色体短串联重复序列位点突变率的比较,这些位点用于人类法医遗传学。
Int J Legal Med. 2014 Jan;128(1):1-9. doi: 10.1007/s00414-013-0847-2. Epub 2013 Apr 3.
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Genome analyses substantiate male mutation bias in many species.基因组分析证实了许多物种中的雄性突变偏倚。
Bioessays. 2011 Dec;33(12):938-45. doi: 10.1002/bies.201100091. Epub 2011 Oct 18.