RHO分类：一种用于细菌里氏非血红素铁环羟基化加氧酶分类的平台。

ClassRHO: a platform for classification of bacterial rieske non-heme iron ring-hydroxylating oxygenases.

作者信息

Baek Songjoon, Kweon Ohgew, Kim Seong-Jae, Baek Dong-Heon, Chen James J, Cerniglia Carl E

机构信息

Division of Personalized Nutrition and Medicine, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA.

出版信息

J Microbiol Methods. 2009 Mar;76(3):307-9. doi: 10.1016/j.mimet.2008.11.003. Epub 2008 Nov 28.

DOI:10.1016/j.mimet.2008.11.003

PMID:19095015

Abstract

We have developed an easy-to-use multiplatform classification tool, ClassRHO, which facilitates classification and comparison of bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases (RHOs). Visualization and analysis can be generated on-the-fly by entering or uploading RHO query sequences. Pre-computed classifications were implemented for 42 standard RHO sequences. These 42 RHO sequences can be flexibly selected based on user requests. ClassRHO provides users with many options to view and analyze RHO sequences.

摘要

我们开发了一种易于使用的多平台分类工具ClassRHO，它有助于细菌里氏非血红素铁芳香环羟化加氧酶（RHOs）的分类和比较。通过输入或上传RHO查询序列，可以即时生成可视化和分析结果。对42个标准RHO序列进行了预计算分类。这42个RHO序列可以根据用户需求灵活选择。ClassRHO为用户提供了许多查看和分析RHO序列的选项。