Zhang Rui, Nguyen Toan T
School of Physics, Georgia Institute of Technology, 837 State Street, Atlanta, Georgia 30332-0430, USA.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Nov;78(5 Pt 1):051903. doi: 10.1103/PhysRevE.78.051903. Epub 2008 Nov 5.
Budding from the plasma membrane of the host cell is an indispensable step in the life cycle of the human immunodeficiency virus (HIV), which belongs to a large family of enveloped RNA viruses, retroviruses. Unlike regular enveloped viruses, retrovirus budding happens concurrently with the self-assembly of the main retrovirus protein subunits (called Gag protein after the name of the genetic material that codes for this protein: Group-specific AntiGen) into spherical virus capsids on the cell membrane. Led by this unique budding and assembly mechanism, we study the free energy profile of retrovirus budding, taking into account the Gag-Gag attraction energy and the membrane elastic energy. We find that if the Gag-Gag attraction is strong, budding always proceeds to completion. During early stage of budding, the zenith angle of partial budded capsids, alpha , increases with time as alpha proportional t1/2. However, if the Gag-Gag attraction is weak, a metastable state of partial budding appears. The zenith angle of these partially spherical capsids is given by alpha0 approximately (tau2/kappasigma)1/4 in a linear approximation, where kappa and sigma are the bending modulus and the surface tension of the membrane, and tau is a line tension of the capsid proportional to the strength of Gag-Gag attraction. Numerically, we find alpha0<0.3pi without any approximations. Using experimental parameters, we show that HIV budding and assembly always proceed to completion in normal biological conditions. On the other hand, by changing Gag-Gag interaction strength or membrane rigidity, it is relatively easy to tune it back and forth between complete budding and partial budding. Our model agrees reasonably well with experiments observing partial budding of retroviruses including HIV.
从宿主细胞质膜出芽是人类免疫缺陷病毒(HIV)生命周期中不可或缺的一步,HIV属于包膜RNA病毒的大家族——逆转录病毒。与普通包膜病毒不同,逆转录病毒出芽与主要逆转录病毒蛋白亚基(根据编码该蛋白的遗传物质命名为Gag蛋白:群特异性抗原)在细胞膜上自组装成球形病毒衣壳同时发生。在这种独特的出芽和组装机制的引领下,我们研究了逆转录病毒出芽的自由能分布,同时考虑了Gag - Gag吸引力和膜弹性能。我们发现,如果Gag - Gag吸引力很强,出芽总是会进行到底。在出芽早期,部分出芽衣壳的顶角α随时间增加,α与t1/2成正比。然而,如果Gag - Gag吸引力较弱,就会出现部分出芽的亚稳态。在线性近似下,这些部分球形衣壳的顶角由α0约为(tau2/kappasigma)1/4给出,其中κ和σ分别是膜的弯曲模量和表面张力,而tau是与Gag - Gag吸引力强度成正比的衣壳线张力。通过数值计算,我们发现α0<0.3π,无需任何近似。利用实验参数,我们表明HIV在正常生物学条件下的出芽和组装总是会进行到底。另一方面,通过改变Gag - Gag相互作用强度或膜的刚性,在完全出芽和部分出芽之间来回调节相对容易。我们的模型与观察包括HIV在内的逆转录病毒部分出芽的实验结果相当吻合。