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利用表达序列标签分析蚯蚓前部再生过程中的基因表达谱。

Gene expression profile in the anterior regeneration of the earthworm using expressed sequence tags.

作者信息

Cho Sung-Jin, Lee Myung Sik, Tak Eun Sik, Lee Eun, Koh Ki Seok, Ahn Chi Hyun, Park Soon Cheol

机构信息

Department of Life Science, Chung-Ang University, Seoul.

出版信息

Biosci Biotechnol Biochem. 2009 Jan;73(1):29-34. doi: 10.1271/bbb.80391. Epub 2009 Jan 7.

Abstract

In order to gain insight into the gene expression profiles associated with anterior regeneration of the earthworm, Perionyx excavatus, we analyzed 1,159 expressed sequence tags (ESTs) derived from cDNA library early anterior regenerated tissue. Among the 1,159 ESTs analyzed, 622 (53.7%) ESTs showed significant similarity to known genes and represented 338 genes, of which 233 ESTs were singletons and 105 ESTs manifested as two or more ESTs. While 663 ESTs (57.2%) were sequenced only once, 308 ESTs (26.6%) appeared 2 to 5 times, and 188 ESTs (16.2%) were sequenced more than 5 times. A total of 803 genes were categorized into 15 groups according to their biological functions. Among 1,159 ESTs sequenced, we found several gene encoding signaling molecules, such as Notch and Distal-less. The ESTs used in this study should provide a resource for future research in earthworm regeneration.

摘要

为了深入了解与赤子爱胜蚓前部再生相关的基因表达谱,我们分析了来自早期前部再生组织cDNA文库的1159个表达序列标签(EST)。在分析的1159个EST中,622个(53.7%)EST与已知基因具有显著相似性,代表338个基因,其中233个EST是单拷贝,105个EST表现为两个或更多个EST。663个EST(57.2%)仅测序一次,308个EST(26.6%)出现2至5次,188个EST(16.2%)测序超过5次。根据其生物学功能,共有803个基因被分为15组。在测序的1159个EST中,我们发现了几个编码信号分子的基因,如Notch和Distal-less。本研究中使用的EST应为蚯蚓再生的未来研究提供资源。

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