Mandal Sasthi C, Sarangi Ronit, Acharya Atanu
Department of Chemistry, Syracuse University, Syracuse, New York 13244, United States.
BioInspired Syracuse, Syracuse University, Syracuse, New York 13244, United States.
J Chem Inf Model. 2025 May 12;65(9):4568-4575. doi: 10.1021/acs.jcim.4c02382. Epub 2025 Apr 25.
MtrCAB protein complex plays a crucial role in exporting electrons through the outer membrane (OM) to external acceptors. This complex consists of three proteins and contains 20 hemes. Optimal protein-protein interactions and, consequently, heme-heme interactions facilitate efficient electron transfer through the conduit of hemes. The cytochrome MtrA remains mostly inside porin MtrB, and the MtrB barrel contains two calcium ions on its surface. In this study, we investigate the effect of porin-bound calcium ions on the heme-heme distances in the twenty-heme network. We performed all-atom molecular dynamics simulations of the OM-protein complex, MtrCAB, in the presence and absence of the MtrB-bound calcium ions. We observe that the calcium ions bound to MtrB affect the interfacial heme-heme distance when all of the hemes are oxidized and impact one of the heme-heme distances in MtrC when all of the hemes are reduced. In both cases, the absence of calcium ions increases the heme-heme distance, highlighting the crucial role of calcium ions in maintaining the heme network, which is essential for long-range charge transport.
MtrCAB蛋白复合物在通过外膜(OM)向外部受体输出电子的过程中起着关键作用。该复合物由三种蛋白质组成,含有20个血红素。最佳的蛋白质-蛋白质相互作用以及由此产生的血红素-血红素相互作用有助于通过血红素管道进行有效的电子转移。细胞色素MtrA大部分保留在孔蛋白MtrB内部,并且MtrB桶状结构在其表面含有两个钙离子。在本研究中,我们研究了与孔蛋白结合的钙离子对二十血红素网络中血红素-血红素距离的影响。我们在存在和不存在与MtrB结合的钙离子的情况下,对OM-蛋白质复合物MtrCAB进行了全原子分子动力学模拟。我们观察到,当所有血红素都被氧化时,与MtrB结合的钙离子会影响界面血红素-血红素距离;当所有血红素都被还原时,会影响MtrC中一个血红素-血红素距离。在这两种情况下,钙离子的缺失都会增加血红素-血红素距离,突出了钙离子在维持血红素网络中的关键作用,而这对于长距离电荷传输至关重要。