Fundamental aspects of protein-protein association kinetics.
作者信息
Schreiber G, Haran G, Zhou H-X
机构信息
Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel.
出版信息
Chem Rev. 2009 Mar 11;109(3):839-60. doi: 10.1021/cr800373w.
Abstract
摘要
相似文献
1
Fundamental aspects of protein-protein association kinetics.
Chem Rev. 2009 Mar 11;109(3):839-60. doi: 10.1021/cr800373w.
2
Understanding protein folding with energy landscape theory. Part II: Quantitative aspects.
Q Rev Biophys. 2002 Aug;35(3):205-86. doi: 10.1017/s0033583502003785.
3
Identifying the protein folding nucleus using molecular dynamics.
J Mol Biol. 2000 Mar 10;296(5):1183-8. doi: 10.1006/jmbi.1999.3534.
4
Exploring the charge space of protein-protein association: a proteomic study.
Proteins. 2005 Aug 15;60(3):341-52. doi: 10.1002/prot.20489.
5
Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: deciphering the effect of intermolecular interactions on computational structure prediction of the p27Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex.
Proteins. 2005 Feb 15;58(3):706-16. doi: 10.1002/prot.20351.
6
Folding with downhill behavior and low cooperativity of proteins.
Proteins. 2006 Apr 1;63(1):165-73. doi: 10.1002/prot.20857.
7
Automatic prediction of protein interactions with large scale motion.
Proteins. 2007 Dec 1;69(4):764-73. doi: 10.1002/prot.21759.
8
Visualization of unfavorable interactions in protein folds.
Bioinformatics. 2008 May 1;24(9):1206-7. doi: 10.1093/bioinformatics/btn108. Epub 2008 Mar 29.
9
Oscillatory molecular driving force for protein folding at high concentration: a molecular simulation.
J Phys Chem B. 2008 Mar 6;112(9):2686-93. doi: 10.1021/jp076940o. Epub 2008 Feb 12.
10
Understanding protein folding via free-energy surfaces from theory and experiment.
Trends Biochem Sci. 2000 Jul;25(7):331-9. doi: 10.1016/s0968-0004(00)01610-8.
引用本文的文献
1
NIPBL and STAG1 enable loop extrusion by providing differential DNA-cohesin affinity.
Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2514190122. doi: 10.1073/pnas.2514190122. Epub 2025 Aug 5.
2
Designing Catalysts to Accelerate a Protein-Peptide Assembly-Reaction Cascade.
ACS Cent Sci. 2025 Jun 16;11(7):1166-1177. doi: 10.1021/acscentsci.5c00481. eCollection 2025 Jul 23.
3
Formation of an Amyloid-like Structure During In Vitro Interaction of Titin and Myosin-Binding Protein C.
Int J Mol Sci. 2025 Jul 18;26(14):6910. doi: 10.3390/ijms26146910.
4
Spatiotemporal dynamics of NF-κB/Dorsal inhibitor IκBα/Cactus in blastoderm embryos.
iScience. 2025 Jun 9;28(7):112854. doi: 10.1016/j.isci.2025.112854. eCollection 2025 Jul 18.
5
FINCHES: A Computational Framework for Predicting Intermolecular Interactions in Intrinsically Disordered Proteins.
Int J Mol Sci. 2025 Jun 28;26(13):6246. doi: 10.3390/ijms26136246.
6
Editorial: Exploring molecular recognition: integrating experimental and computational approaches.
Front Mol Biosci. 2025 Jun 10;12:1637793. doi: 10.3389/fmolb.2025.1637793. eCollection 2025.
7
The Electric Field in Solid State Nanopores Causes Dissociation of Strong Biomolecular Interactions.
Nano Lett. 2025 Jun 18;25(24):9654-9661. doi: 10.1021/acs.nanolett.5c01447. Epub 2025 May 19.
8
Design of immunogens to present a tumor-specific cryptic epitope.
Sci Rep. 2025 Apr 2;15(1):11322. doi: 10.1038/s41598-025-94295-5.
9
Leveraging microfluidic confinement to boost assay sensitivity and selectivity.
Chem Sci. 2025 Mar 11;16(16):6965-6974. doi: 10.1039/d5sc00199d. eCollection 2025 Apr 16.
10
Bayesian Inference of Binding Kinetics from Fluorescence Time Series.
bioRxiv. 2025 Feb 3:2025.02.03.636267. doi: 10.1101/2025.02.03.636267.
本文引用的文献
1
Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.
Annu Rev Biophys. 2008;37:375-97. doi: 10.1146/annurev.biophys.37.032807.125817.
2
Crowding effects on diffusion in solutions and cells.
Annu Rev Biophys. 2008;37:247-63. doi: 10.1146/annurev.biophys.37.032807.125824.
3
Binding-induced folding of a natively unstructured transcription factor.
PLoS Comput Biol. 2008 Apr 11;4(4):e1000060. doi: 10.1371/journal.pcbi.1000060.
4
Prediction of salt and mutational effects on the association rate of U1A protein and U1 small nuclear RNA stem/loop II.
J Phys Chem B. 2008 May 15;112(19):5955-60. doi: 10.1021/jp075919k. Epub 2007 Dec 22.
5
Electrostatic rate enhancement and transient complex of protein-protein association.
Proteins. 2008 Apr;71(1):320-35. doi: 10.1002/prot.21679.
6
Role of electrostatic interactions in transient encounter complexes in protein-protein association investigated by paramagnetic relaxation enhancement.
J Am Chem Soc. 2007 Oct 31;129(43):12954-5. doi: 10.1021/ja0760978. Epub 2007 Oct 6.
7
Extracting kinetic rate constants from surface plasmon resonance array systems.
Anal Biochem. 2008 Feb 1;373(1):112-20. doi: 10.1016/j.ab.2007.08.017. Epub 2007 Aug 19.
8
Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity.
J Biol Chem. 2007 Oct 19;282(42):30658-66. doi: 10.1074/jbc.M704513200. Epub 2007 Aug 8.
9
PDZ domains: folding and binding.
Biochemistry. 2007 Jul 31;46(30):8701-8. doi: 10.1021/bi7008618. Epub 2007 Jul 10.
10
On the dynamic nature of the transition state for protein-protein association as determined by double-mutant cycle analysis and simulation.
J Mol Biol. 2007 Aug 3;371(1):180-96. doi: 10.1016/j.jmb.2007.05.032. Epub 2007 May 18.
Zotero 插件