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通过对质子化蛋白质进行梯度增强的IPAP-HSQC实验提高了15N-1H标量和剩余偶极耦合的精度。

Improved accuracy of 15N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins.

作者信息

Yao Lishan, Ying Jinfa, Bax Ad

机构信息

Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, MD 20892-0520, USA.

出版信息

J Biomol NMR. 2009 Mar;43(3):161-70. doi: 10.1007/s10858-009-9299-x. Epub 2009 Feb 10.

Abstract

The presence of dipole-dipole cross-correlated relaxation as well as unresolved E.COSY effects adversely impacts the accuracy of (1)J(NH) splittings measured from gradient-enhanced IPAP-HSQC spectra. For isotropic samples, the size of the systematic errors caused by these effects depends on the values of (2)J(NHalpha), (3)J(NHbeta) and (3)J(HNHalpha). Insertion of band-selective (1)H decoupling pulses in the IPAP-HSQC experiment eliminates these systematic errors and for the protein GB3 yields (1)J(NH) splittings that agree to within a root-mean-square difference of 0.04 Hz with values measured for perdeuterated GB3. Accuracy of the method is also highlighted by a good fit to the GB3 structure of the (1)H-(15)N RDCs extracted from the minute differences in (1)J(NH) splitting measured at 500 and 750 MHz (1)H frequencies, resulting from magnetic susceptibility anisotropy. A nearly complete set of (2)J(NHalpha) couplings was measured in GB3 in order to evaluate whether the impact of cross-correlated relaxation is dominated by the (15)N-(1)H(alpha) or (15)N-(1)H(beta) dipolar interaction. As expected, we find that (2)J(NHalpha) < or = 2 Hz, with values in the alpha-helix (0.86 +/- 0.52 Hz) slightly larger than in beta-sheet (0.66 +/- 0.26 Hz). Results indicate that under isotropic conditions, N-H(N)/N-H(beta) cross-correlated relaxation often dominates. Unresolved E.COSY effects under isotropic conditions involve (3)J(HNHalpha) and J(NHalpha), but when weakly aligned any aliphatic proton proximate to both N and H(N) can contribute.

摘要

偶极-偶极交叉相关弛豫的存在以及未解析的E.COSY效应会对从梯度增强的IPAP-HSQC谱测量的(1)J(NH)裂分的准确性产生不利影响。对于各向同性样品,由这些效应引起的系统误差大小取决于(2)J(NHα)、(3)J(NHβ)和(3)J(HNHα)的值。在IPAP-HSQC实验中插入带选择性(1)H去耦脉冲可消除这些系统误差,对于蛋白质GB3,得到的(1)J(NH)裂分与全氘代GB3测量值的均方根差在0.04 Hz以内。从500和750 MHz (1)H频率下测量的(1)J(NH)裂分的微小差异中提取的(1)H-(15)N RDCs与GB3结构的良好拟合也突出了该方法的准确性,这种差异是由磁化率各向异性引起的。为了评估交叉相关弛豫的影响是否主要由(15)N-(1)Hα或(15)N-(1)Hβ偶极相互作用主导,在GB3中测量了几乎完整的一组(2)J(NHα)耦合。正如预期的那样,我们发现(2)J(NHα)≤2 Hz,α-螺旋中的值(0.86±0.52 Hz)略大于β-折叠中的值(0.66±0.26 Hz)。结果表明,在各向同性条件下,N-H(N)/N-Hβ交叉相关弛豫通常占主导。各向同性条件下未解析的E.COSY效应涉及(3)J(HNHα)和J(NHα),但当弱取向时,任何靠近N和H(N)的脂肪族质子都可能有贡献。

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