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Poly(dA:dT) tracts: major determinants of nucleosome organization.
Curr Opin Struct Biol. 2009 Feb;19(1):65-71. doi: 10.1016/j.sbi.2009.01.004. Epub 2009 Feb 7.
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Positioned and G/C-capped poly(dA:dT) tracts associate with the centers of nucleosome-free regions in yeast promoters.
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Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Cell. 2018 Aug 23;174(5):1127-1142.e19. doi: 10.1016/j.cell.2018.07.011. Epub 2018 Aug 2.
8
Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure.
J Mol Biol. 2006 Aug 25;361(4):617-24. doi: 10.1016/j.jmb.2006.06.051. Epub 2006 Jul 5.
9
Poly(dA:dT)-rich DNAs are highly flexible in the context of DNA looping.
PLoS One. 2013 Oct 11;8(10):e75799. doi: 10.1371/journal.pone.0075799. eCollection 2013.
10
Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.
Nucleic Acids Res. 1981 Dec 21;9(24):6869-88. doi: 10.1093/nar/9.24.6869.

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Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond.
J Chem Inf Model. 2025 Sep 8;65(17):9208-9229. doi: 10.1021/acs.jcim.5c00576. Epub 2025 Aug 25.
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The emerging sequence grammar of 3D genome organisation.
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Thymic epithelial cells amplify epigenetic noise to promote immune tolerance.
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Evidence that transient replication errors initiate nuclear genome mutations.
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Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure.
Nat Commun. 2025 Feb 19;16(1):1312. doi: 10.1038/s41467-025-56197-y.
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Native nucleosome-positioning elements for the investigation of nucleosome repositioning.
bioRxiv. 2025 Jan 18:2025.01.17.633597. doi: 10.1101/2025.01.17.633597.
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Tuning fungal promoters for the expression of eukaryotic proteins.
World J Microbiol Biotechnol. 2024 Dec 2;40(12):400. doi: 10.1007/s11274-024-04198-2.

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The DNA-encoded nucleosome organization of a eukaryotic genome.
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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.
PLoS Comput Biol. 2008 Nov;4(11):e1000216. doi: 10.1371/journal.pcbi.1000216. Epub 2008 Nov 7.
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A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.
Genome Res. 2008 Jul;18(7):1073-83. doi: 10.1101/gr.078261.108. Epub 2008 Jun 12.
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Chromatin remodelling at promoters suppresses antisense transcription.
Nature. 2007 Dec 13;450(7172):1031-5. doi: 10.1038/nature06391.
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A high-resolution atlas of nucleosome occupancy in yeast.
Nat Genet. 2007 Oct;39(10):1235-44. doi: 10.1038/ng2117. Epub 2007 Sep 16.
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High-throughput mapping of the chromatin structure of human promoters.
Nat Biotechnol. 2007 Feb;25(2):244-8. doi: 10.1038/nbt1279. Epub 2007 Jan 14.
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Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure.
J Mol Biol. 2006 Aug 25;361(4):617-24. doi: 10.1016/j.jmb.2006.06.051. Epub 2006 Jul 5.
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Genome-scale identification of nucleosome positions in S. cerevisiae.
Science. 2005 Jul 22;309(5734):626-30. doi: 10.1126/science.1112178. Epub 2005 Jun 16.
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High-resolution structure of an extended A-tract: [d(CGCAAATTTGCG)]2.
J Am Chem Soc. 2004 Dec 1;126(47):15330-1. doi: 10.1021/ja045207x.

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