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一种基于生物物理学的线粒体钙单向转运体动力学数学模型。

A biophysically based mathematical model for the kinetics of mitochondrial calcium uniporter.

作者信息

Dash Ranjan K, Qi Feng, Beard Daniel A

机构信息

Biotechnology and Bioengineering Center and Department of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA.

出版信息

Biophys J. 2009 Feb 18;96(4):1318-32. doi: 10.1016/j.bpj.2008.11.005.

Abstract

Ca2+ transport through mitochondrial Ca2+ uniporter is the primary Ca2+ uptake mechanism in respiring mitochondria. Thus, the uniporter plays a key role in regulating mitochondrial Ca2+. Despite the importance of mitochondrial Ca2+ to metabolic regulation and mitochondrial function, and to cell physiology and pathophysiology, the structure and composition of the uniporter functional unit and kinetic mechanisms associated with Ca2+ transport into mitochondria are still not well understood. In this study, based on available experimental data on the kinetics of Ca2+ transport via the uniporter, a mechanistic kinetic model of the uniporter is introduced. The model is thermodynamically balanced and satisfactorily describes a large number of independent data sets in the literature on initial or pseudo-steady-state influx rates of Ca2+ via the uniporter measured under a wide range of experimental conditions. The model is derived assuming a multi-state catalytic binding and Eyring's free-energy barrier theory-based transformation mechanisms associated with the carrier-mediated facilitated transport and electrodiffusion. The model is a great improvement over the previous theoretical models of mitochondrial Ca2+ uniporter in the literature in that it is thermodynamically balanced and matches a large number of independently published data sets on mitochondrial Ca2+ uptake. This theoretical model will be critical in developing mechanistic, integrated models of mitochondrial Ca2+ handling and bioenergetics which can be helpful in understanding the mechanisms by which Ca2+ plays a role in mediating signaling pathways and modulating mitochondrial energy metabolism.

摘要

钙离子通过线粒体钙离子单向转运体的转运是呼吸状态下线粒体摄取钙离子的主要机制。因此,单向转运体在调节线粒体钙离子方面起着关键作用。尽管线粒体钙离子对代谢调节、线粒体功能以及细胞生理和病理生理都很重要,但单向转运体功能单元的结构和组成以及与钙离子转运进入线粒体相关的动力学机制仍未得到很好的理解。在本研究中,基于通过单向转运体进行钙离子转运动力学的现有实验数据,引入了单向转运体的机制动力学模型。该模型在热力学上是平衡的,并且令人满意地描述了文献中大量关于在广泛实验条件下通过单向转运体测量的钙离子初始或伪稳态流入速率的独立数据集。该模型是在假设与载体介导的易化转运和电扩散相关的多状态催化结合以及基于艾林自由能垒理论的转化机制的基础上推导出来的。该模型相对于文献中先前的线粒体钙离子单向转运体理论模型有很大改进,因为它在热力学上是平衡的,并且与大量关于线粒体钙离子摄取的独立发表的数据集相匹配。这个理论模型对于开发线粒体钙离子处理和生物能量学的机制性综合模型至关重要,这有助于理解钙离子在介导信号通路和调节线粒体能量代谢中发挥作用的机制。

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