Dickson Alex, Warmflash Aryeh, Dinner Aaron R
James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA.
J Chem Phys. 2009 Feb 21;130(7):074104. doi: 10.1063/1.3070677.
We recently introduced an umbrella sampling method for obtaining nonequilibrium steady-state probability distributions projected onto an arbitrary number of coordinates that characterize a system (order parameters) [A. Warmflash, P. Bhimalapuram, and A. R. Dinner, J. Chem. Phys. 127, 154112 (2007)]. Here, we show how our algorithm can be combined with the image update procedure from the finite-temperature string method for reversible processes [E. Vanden-Eijnden and M. Venturoli, "Revisiting the finite temperature string method for calculation of reaction tubes and free energies," J. Chem. Phys. (in press)] to enable restricted sampling of a nonequilibrium steady state in the vicinity of a path in a many-dimensional space of order parameters. For the study of transitions between stable states, the adapted algorithm results in improved scaling with the number of order parameters and the ability to progressively refine the regions of enforced sampling. We demonstrate the algorithm by applying it to a two-dimensional model of driven Brownian motion and a coarse-grained (Ising) model for nucleation under shear. It is found that the choice of order parameters can significantly affect the convergence of the simulation; local magnetization variables other than those used previously for sampling transition paths in Ising systems are needed to ensure that the reactive flux is primarily contained within a tube in the space of order parameters. The relation of this method to other algorithms that sample the statistics of path ensembles is discussed.
我们最近引入了一种伞形抽样方法,用于获得投影到任意数量表征系统的坐标(序参量)上的非平衡稳态概率分布 [A. Warmflash, P. Bhimalapuram, and A. R. Dinner, J. Chem. Phys. 127, 154112 (2007)]。在此,我们展示了如何将我们的算法与用于可逆过程的有限温度弦方法中的镜像更新程序 [E. Vanden-Eijnden 和 M. Venturoli, “Revisiting the finite temperature string method for calculation of reaction tubes and free energies,” J. Chem. Phys. (in press)] 相结合,以实现对序参量多维空间中路径附近非平衡稳态的受限抽样。对于稳定态之间转变的研究,改进后的算法在序参量数量方面具有更好的标度律,并且能够逐步细化强制抽样区域。我们通过将该算法应用于驱动布朗运动的二维模型以及剪切作用下成核的粗粒化(伊辛)模型来演示该算法。结果发现,序参量的选择会显著影响模拟的收敛性;需要使用伊辛系统中先前用于抽样转变路径之外的局部磁化变量,以确保反应通量主要包含在序参量空间中的一个管内。本文还讨论了该方法与其他对路径系综统计进行抽样的算法之间的关系。