Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, United States.
Joint CMU-Pitt Ph.D. Program in Computational Biology, University of Pittsburgh, Pittsburgh, United States.
Elife. 2022 Feb 21;11:e74866. doi: 10.7554/eLife.74866.
How a cell changes from one stable phenotype to another one is a fundamental problem in developmental and cell biology. Mathematically, a stable phenotype corresponds to a stable attractor in a generally multi-dimensional state space, which needs to be destabilized so the cell relaxes to a new attractor. Two basic mechanisms for destabilizing a stable fixed point, pitchfork and saddle-node bifurcations, have been extensively studied theoretically; however, direct experimental investigation at the single-cell level remains scarce. Here, we performed live cell imaging studies and analyses in the framework of dynamical systems theories on epithelial-to-mesenchymal transition (EMT). While some mechanistic details remain controversial, EMT is a cell phenotypic transition (CPT) process central to development and pathology. Through time-lapse imaging we recorded single cell trajectories of human A549/Vim-RFP cells undergoing EMT induced by different concentrations of exogenous TGF-β in a multi-dimensional cell feature space. The trajectories clustered into two distinct groups, indicating that the transition dynamics proceeds through parallel paths. We then reconstructed the reaction coordinates and the corresponding quasi-potentials from the trajectories. The potentials revealed a plausible mechanism for the emergence of the two paths where the original stable epithelial attractor collides with two saddle points sequentially with increased TGF-β concentration, and relaxes to a new one. Functionally, the directional saddle-node bifurcation ensures a CPT proceeds towards a specific cell type, as a mechanistic realization of the canalization idea proposed by Waddington.
细胞如何从一种稳定的表型转变为另一种稳定的表型,是发育和细胞生物学中的一个基本问题。从数学上讲,稳定的表型对应于一般多维状态空间中的稳定吸引子,需要使其失稳,以便细胞松弛到新的吸引子。已经从理论上广泛研究了两种破坏稳定平衡点的基本机制,叉头和鞍结分岔;然而,在单细胞水平上的直接实验研究仍然很少。在这里,我们在动态系统理论的框架内,对上皮-间质转化 (EMT) 进行了活细胞成像研究和分析。虽然一些机制细节仍存在争议,但 EMT 是发育和病理学中核心的细胞表型转变 (CPT) 过程。通过延时成像,我们记录了人 A549/Vim-RFP 细胞在 TGF-β 浓度不同的条件下,在多维细胞特征空间中发生 EMT 的单个细胞轨迹。轨迹聚类为两个不同的组,表明过渡动力学通过平行路径进行。然后,我们从轨迹中重建了反应坐标和相应的准势。这些势揭示了两个路径出现的一种可能机制,即随着 TGF-β浓度的增加,原始稳定的上皮吸引子与两个鞍点依次碰撞,并松弛到一个新的吸引子。从功能上讲,定向鞍结分岔确保了 CPT 朝着特定的细胞类型进行,这是 Waddington 提出的管道化思想的一种机制实现。