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RNA聚合酶IV在玉米的副突变中发挥作用。

RNA polymerase IV functions in paramutation in Zea mays.

作者信息

Erhard Karl F, Stonaker Jennifer L, Parkinson Susan E, Lim Jana P, Hale Christopher J, Hollick Jay B

机构信息

Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720-3102, USA.

出版信息

Science. 2009 Feb 27;323(5918):1201-5. doi: 10.1126/science.1164508.

DOI:10.1126/science.1164508
PMID:19251626
Abstract

Plants have distinct RNA polymerase complexes (Pol IV and Pol V) with largely unknown roles in maintaining small RNA-associated gene silencing. Curiously, the eudicot Arabidopsis thaliana is not affected when either function is lost. By use of mutation selection and positional cloning, we showed that the largest subunit of the presumed maize Pol IV is involved in paramutation, an inherited epigenetic change facilitated by an interaction between two alleles, as well as normal maize development. Bioinformatics analyses and nuclear run-on transcription assays indicate that Pol IV does not engage in the efficient RNA synthesis typical of the three major eukaryotic DNA-dependent RNA polymerases. These results indicate that Pol IV employs abnormal RNA polymerase activities to achieve genome-wide silencing and that its absence affects both maize development and heritable epigenetic changes.

摘要

植物具有独特的RNA聚合酶复合物(Pol IV和Pol V),它们在维持与小RNA相关的基因沉默方面的作用很大程度上未知。奇怪的是,当这两种功能丧失时,双子叶植物拟南芥不受影响。通过突变筛选和定位克隆,我们表明推测的玉米Pol IV的最大亚基参与了副突变,这是一种由两个等位基因之间的相互作用促进的遗传表观遗传变化,以及正常的玉米发育。生物信息学分析和核运行转录分析表明,Pol IV不参与三种主要真核生物DNA依赖性RNA聚合酶典型的高效RNA合成。这些结果表明,Pol IV利用异常的RNA聚合酶活性来实现全基因组沉默,并且它的缺失会影响玉米发育和可遗传的表观遗传变化。

相似文献

1
RNA polymerase IV functions in paramutation in Zea mays.RNA聚合酶IV在玉米的副突变中发挥作用。
Science. 2009 Feb 27;323(5918):1201-5. doi: 10.1126/science.1164508.
2
RNA polymerase IV directs silencing of endogenous DNA.RNA聚合酶IV指导内源性DNA的沉默。
Science. 2005 Apr 1;308(5718):118-20. doi: 10.1126/science.1106910. Epub 2005 Feb 3.
3
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes.在植物特异性 RNA 聚合酶三个第二大亚基之一的表观遗传修饰调控因子 2 中,一个显性突变破坏了多个 siRNA 沉默过程。
PLoS Genet. 2009 Nov;5(11):e1000725. doi: 10.1371/journal.pgen.1000725. Epub 2009 Nov 20.
4
An RNA-dependent RNA polymerase is required for paramutation in maize.玉米的副突变需要一种依赖RNA的RNA聚合酶。
Nature. 2006 Jul 20;442(7100):295-8. doi: 10.1038/nature04884.
5
RNA polymerase IV and transcriptional silencing.RNA聚合酶IV与转录沉默
Nat Genet. 2005 Jul;37(7):659-60. doi: 10.1038/ng0705-659.
6
Finding the right template: RNA Pol IV, a plant-specific RNA polymerase.寻找合适的模板:RNA聚合酶IV,一种植物特有的RNA聚合酶。
Mol Cell. 2005 Mar 18;17(6):754-6. doi: 10.1016/j.molcel.2005.03.003.
7
Maize RNA polymerase IV defines trans-generational epigenetic variation.玉米 RNA 聚合酶 IV 定义了跨代的表观遗传变异。
Plant Cell. 2013 Mar;25(3):808-19. doi: 10.1105/tpc.112.107680. Epub 2013 Mar 19.
8
Paramutation: a process for acquiring trans-generational regulatory states.变位:一种获得跨代调控状态的过程。
Curr Opin Plant Biol. 2011 Apr;14(2):210-6. doi: 10.1016/j.pbi.2011.02.005. Epub 2011 Mar 17.
9
Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.玉米RNA聚合酶IV影响附近有转座元件插入的基因的表达,并对全基因组转录产生抑制作用。
BMC Plant Biol. 2017 Oct 12;17(1):161. doi: 10.1186/s12870-017-1108-1.
10
Diverse gene-silencing mechanisms with distinct requirements for RNA polymerase subunits in Zea mays.玉米中对RNA聚合酶亚基有不同要求的多种基因沉默机制。
Genetics. 2014 Nov;198(3):1031-42. doi: 10.1534/genetics.114.168518. Epub 2014 Aug 27.

引用本文的文献

1
CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing.CLSY 与 Pol IV 的对接需要一个保守结构域,该结构域对于小 RNA 生物发生和转座子沉默至关重要。
Nat Commun. 2024 Nov 27;15(1):10298. doi: 10.1038/s41467-024-54268-0.
2
Charophytic Green Algae Encode Ancestral Polymerase IV/Polymerase V Subunits and a CLSY/DRD1 Homolog.石莼型绿藻编码祖先聚合酶 IV/聚合酶 V 亚基和 CLSY/DRD1 同源物。
Genome Biol Evol. 2024 Jun 4;16(6). doi: 10.1093/gbe/evae119.
3
Paramutation at the maize pl1 locus is associated with RdDM activity at distal tandem repeats.
玉米 pl1 基因座的位置改变与远端串联重复序列的 RdDM 活性有关。
PLoS Genet. 2024 May 30;20(5):e1011296. doi: 10.1371/journal.pgen.1011296. eCollection 2024 May.
4
RNA-directed DNA methylation mutants reduce histone methylation at the paramutated maize booster1 enhancer.RNA 指导的 DNA 甲基化突变降低了突变型玉米增强子 1 上的组蛋白甲基化。
Plant Physiol. 2024 May 31;195(2):1161-1179. doi: 10.1093/plphys/kiae072.
5
Transcribed enhancer sequences are required for maize p1 paramutation.转录增强子序列是玉米 p1 顺式突变所必需的。
Genetics. 2024 Jan 3;226(1). doi: 10.1093/genetics/iyad178.
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Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains.植物聚合酶 IV 通过组蛋白修饰使染色质敏感,以防止沉默向蛋白质编码区扩散。
Genome Res. 2023 May;33(5):715-728. doi: 10.1101/gr.277353.122. Epub 2023 Jun 5.
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Plant Cell. 2023 May 29;35(6):1787-1800. doi: 10.1093/plcell/koad010.
8
ZMP recruits and excludes Pol IV-mediated DNA methylation in a site-specific manner.ZMP以位点特异性方式招募并排除Pol IV介导的DNA甲基化。
Sci Adv. 2022 Nov 25;8(47):eadc9454. doi: 10.1126/sciadv.adc9454.
9
AGO104 is a RdDM effector of paramutation at the maize b1 locus.AGO104 是玉米 b1 位点印迹变异的 RdDM 效应因子。
PLoS One. 2022 Aug 30;17(8):e0273695. doi: 10.1371/journal.pone.0273695. eCollection 2022.
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A Non-Rogue Mutant Line Induced by ENU Mutagenesis in Paramutated Rogue Peas ( L.) Is Still Sensitive to the Rogue Paramutation.ENU 诱变诱导的非突变型拟轮生矮化突变豌豆(L.)突变系仍然对拟轮生突变敏感。
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