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Methionine ligand lability of type I cytochromes c: detection of ligand loss using protein film voltammetry.I型细胞色素c的甲硫氨酸配体不稳定性:使用蛋白质膜伏安法检测配体损失
J Am Chem Soc. 2008 May 28;130(21):6682-3. doi: 10.1021/ja801071n. Epub 2008 May 3.
2
The cbb3 oxidases are an ancient innovation of the domain bacteria.cbb3氧化酶是细菌域的一项古老创新。
Mol Biol Evol. 2008 Jun;25(6):1158-66. doi: 10.1093/molbev/msn062. Epub 2008 Mar 18.
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Modeling the active-site structure of the cbb3-type oxidase from Rhodobacter sphaeroides.对球形红细菌cbb3型氧化酶活性位点结构进行建模。
Biochemistry. 2008 Apr 8;47(14):4221-7. doi: 10.1021/bi702088r. Epub 2008 Mar 14.
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Electrostatic interactions between FeS clusters in NADH:ubiquinone oxidoreductase (Complex I) from Escherichia coli.来自大肠杆菌的NADH:泛醌氧化还原酶(复合体I)中FeS簇之间的静电相互作用。
Biochemistry. 2008 Mar 11;47(10):3185-93. doi: 10.1021/bi702063t. Epub 2008 Feb 13.
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Diversity of the heme-copper superfamily in archaea: insights from genomics and structural modeling.古菌中血红素-铜超家族的多样性:来自基因组学和结构建模的见解。
Results Probl Cell Differ. 2008;45:1-31. doi: 10.1007/400_2007_046.
6
Thermodynamic redox behavior of the heme centers of cbb3 heme-copper oxygen reductase from Bradyrhizobium japonicum.日本慢生根瘤菌cbb3型血红素-铜氧还原酶血红素中心的热力学氧化还原行为
Biochemistry. 2007 Nov 20;46(46):13245-53. doi: 10.1021/bi700733g. Epub 2007 Oct 27.
7
Comparative genomics and site-directed mutagenesis support the existence of only one input channel for protons in the C-family (cbb3 oxidase) of heme-copper oxygen reductases.比较基因组学和定点诱变技术支持在血红素-铜氧还原酶的C家族(cbb3氧化酶)中质子仅存在一个输入通道。
Biochemistry. 2007 Sep 4;46(35):9963-72. doi: 10.1021/bi700659y. Epub 2007 Aug 4.
8
Evolutionary migration of a post-translationally modified active-site residue in the proton-pumping heme-copper oxygen reductases.质子泵血红素-铜氧化还原酶中翻译后修饰的活性位点残基的进化迁移。
Biochemistry. 2006 Dec 26;45(51):15405-10. doi: 10.1021/bi062026u. Epub 2006 Dec 19.
9
Identification of a histidine-tyrosine cross-link in the active site of the cbb3-type cytochrome c oxidase from Rhodobacter sphaeroides.球形红杆菌cbb3型细胞色素c氧化酶活性位点中组氨酸-酪氨酸交联的鉴定。
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10
Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.在膜蛋白细胞色素c氧化酶的高分辨率结构中鉴定保守的脂质/去污剂结合位点。
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细胞色素cbb3的活性位点。

Active site of cytochrome cbb3.

作者信息

Rauhamäki Virve, Bloch Dmitry A, Verkhovsky Michael I, Wikström Mårten

机构信息

Helsinki Bioenergetics Group, Program for Structural Biology and Biophysics, Institute of Biotechnology, University of Helsinki, P. O. Box 65 (Viikinkaari 1), 00014 Helsinki, Finland.

出版信息

J Biol Chem. 2009 Apr 24;284(17):11301-8. doi: 10.1074/jbc.M808839200. Epub 2009 Feb 28.

DOI:10.1074/jbc.M808839200
PMID:19252222
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2670135/
Abstract

Cytochrome cbb(3) is the most distant member of the heme-copper oxidase family still retaining the following major feature typical of these enzymes: reduction of molecular oxygen to water coupled to proton translocation across the membrane. The thermodynamic properties of the six redox centers, five hemes and a copper ion, in cytochrome cbb(3) from Rhodobacter sphaeroides were studied using optical and EPR spectroscopy. The low spin heme b in the catalytic subunit was shown to have the highest midpoint redox potential (E(m)(,7) +418 mV), whereas the three hemes c in the two other subunits titrated with apparent midpoint redox potentials of +351, +320, and +234 mV. The active site high spin heme b(3) has a very low potential (E(m)(,7) -59 mV) as opposed to the copper center (Cu(B)), which has a high potential (E(m)(,7) +330 mV). The EPR spectrum of the ferric heme b(3) has rhombic symmetry. To explain the origins of the rhombicity, the Glu-383 residue located on the proximal side of heme b(3) was mutated to aspartate and to glutamine. The latter mutation caused a 10 nm blue shift in the optical reduced minus oxidized heme b(3) spectrum, and a dramatic change of the EPR signal toward more axial symmetry, whereas mutation to aspartate had far less severe consequences. These results strongly suggest that Glu-383 is involved in hydrogen bonding to the proximal His-405 ligand of heme b(3), a unique interaction among heme-copper oxidases.

摘要

细胞色素cbb(3)是血红素-铜氧化酶家族中亲缘关系最远的成员,但仍保留着这些酶的以下典型主要特征:将分子氧还原为水,并伴随质子跨膜转运。利用光学光谱和电子顺磁共振光谱研究了球形红杆菌细胞色素cbb(3)中六个氧化还原中心(五个血红素和一个铜离子)的热力学性质。结果表明,催化亚基中的低自旋血红素b具有最高的中点氧化还原电位(E(m)(,7) +418 mV),而另外两个亚基中的三个血红素c的滴定中点氧化还原电位分别为+351、+320和+234 mV。与具有高电位(E(m)(,7) +330 mV)的铜中心(Cu(B))相反,活性位点的高自旋血红素b(3)具有非常低的电位(E(m)(,7) -59 mV)。高铁血红素b(3)的电子顺磁共振光谱具有菱形对称性。为了解释菱形度的起源,将位于血红素b(3)近端的Glu-383残基突变为天冬氨酸和谷氨酰胺。后一种突变导致光学还原减去氧化的血红素b(3)光谱发生10 nm的蓝移,并且电子顺磁共振信号朝着更轴向对称的方向发生显著变化,而突变为天冬氨酸的后果则要轻得多。这些结果强烈表明,Glu-383参与了与血红素b(3)近端His-405配体的氢键形成,这是血红素-铜氧化酶之间独特的相互作用。