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提高古代DNA提取中阴性对照的灵敏度。

Improving the sensitivity of negative controls in ancient DNA extractions.

作者信息

Xu Zhi, Zhang Fan, Xu Bosong, Tan Jingze, Li Shilin, Jin Li

机构信息

State Key Laboratory of Genetic Engineering and MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences and Institutes of Biomedical Sciences, Fudan University, Shanghai, PR China.

出版信息

Electrophoresis. 2009 Apr;30(8):1282-5. doi: 10.1002/elps.200800473.

DOI:10.1002/elps.200800473
PMID:19294688
Abstract

Much attention has been paid on ancient DNA (aDNA) studies, and negative control was used as one of the stringent quality assurance criteria in order to detect potential contamination. However, the results of some aDNA studies showed the evidence of contamination despite their negative controls failed to do so. Using lambda DNA to mock extraneous contaminating DNA, our study showed that aDNA had a property of improving the efficiency of extraction including contaminating DNA, while negative controls had low sensitivity to detect contamination. To circumvent this problem, carrier DNA such as poly(dA) is suggested to be introduced into aDNA extraction.

摘要

古代DNA(aDNA)研究已受到广泛关注,阴性对照被用作严格的质量保证标准之一,以检测潜在的污染。然而,一些aDNA研究的结果显示出污染的迹象,尽管其阴性对照未检测到污染。我们的研究使用λDNA模拟外来污染DNA,结果表明aDNA具有提高包括污染DNA在内的提取效率的特性,而阴性对照对检测污染的敏感性较低。为了解决这个问题,建议将诸如聚(dA)等载体DNA引入aDNA提取中。

相似文献

1
Improving the sensitivity of negative controls in ancient DNA extractions.提高古代DNA提取中阴性对照的灵敏度。
Electrophoresis. 2009 Apr;30(8):1282-5. doi: 10.1002/elps.200800473.
2
Isolation and analysis of DNA from archaeological, clinical, and natural history specimens.从考古、临床和自然历史标本中分离并分析DNA。
Methods Enzymol. 2005;395:87-103. doi: 10.1016/S0076-6879(05)95007-6.
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Extensive human DNA contamination in extracts from ancient dog bones and teeth.古代犬类骨骼和牙齿提取物中存在大量人类DNA污染。
Mol Biol Evol. 2005 Oct;22(10):2040-7. doi: 10.1093/molbev/msi195. Epub 2005 Jun 15.
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Ancient DNA analysis of human populations.人类群体的古DNA分析。
Am J Phys Anthropol. 2000 Jan;111(1):5-23. doi: 10.1002/(SICI)1096-8644(200001)111:1<5::AID-AJPA2>3.0.CO;2-3.
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Nondestructive sampling of human skeletal remains yields ancient nuclear and mitochondrial DNA.对人类骨骼遗骸进行非破坏性采样可获得古代核和线粒体 DNA。
Am J Phys Anthropol. 2012 Feb;147(2):293-300. doi: 10.1002/ajpa.21647. Epub 2011 Dec 20.
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Use of bleach to eliminate contaminating DNA from the surface of bones and teeth.使用漂白剂去除骨骼和牙齿表面的污染性DNA。
Forensic Sci Int. 2005 Nov 10;154(1):53-61. doi: 10.1016/j.forsciint.2004.11.017.
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More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA.更多关于污染的内容:利用不对称分子行为鉴定真正的古代人类DNA。
Mol Biol Evol. 2007 Apr;24(4):998-1004. doi: 10.1093/molbev/msm015. Epub 2007 Jan 25.
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Technical note: improved ancient DNA purification for PCR using ion-exchange columns.技术说明:使用离子交换柱改进用于PCR的古DNA纯化方法。
Am J Phys Anthropol. 2008 May;136(1):114-21. doi: 10.1002/ajpa.20782.
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Fishing for ancient DNA.探寻古代DNA。
Forensic Sci Int Genet. 2008 Mar;2(2):104-7. doi: 10.1016/j.fsigen.2007.09.004. Epub 2007 Nov 19.
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Ancient DNA extraction from bones and teeth.从骨骼和牙齿中提取古代DNA。
Nat Protoc. 2007;2(7):1756-62. doi: 10.1038/nprot.2007.247.

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