Lendel Christofer, Damberg Peter
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
J Biomol NMR. 2009 May;44(1):35-42. doi: 10.1007/s10858-009-9313-3. Epub 2009 Mar 28.
A powerful experiment for the investigation of conformational properties of unstructured states of proteins is presented. The method combines a phase sensitive J-resolved experiment with a (1)H-(15)N SOFAST-HMQC to provide a 3D spectrum with an E.COSY pattern originating from splittings due to (3)J(HNH alpha) and (2)J(NH alpha) couplings. Thereby an effectively homodecoupled (1)H-(15)N correlation spectrum is obtained with significantly improved resolution and greatly reduced spectral overlap compared to standard HSQC and HMQC experiments. The (3)J(HNH alpha) is revealed in three independent ways directly from the peak positions, allowing for internal consistency testing. In addition, the natural H(N) linewidths can easily be extracted from the lineshapes. Thanks to the SOFAST principle, the limited sweep width needed in the J-dimension and the short phase cycle, data accumulation is rapid with excellent sensitivity per time unit. The experiment is demonstrated for the intrinsically unstructured 14 kDa protein alpha-synuclein.
本文介绍了一种用于研究蛋白质非结构化状态构象性质的强大实验方法。该方法将相敏J分辨实验与(1)H - (15)N SOFAST - HMQC相结合,以提供具有E.COSY模式的3D谱,该模式源于(3)J(HNHα)和(2)J(NHα)耦合引起的分裂。由此获得了一个有效的同核去耦(1)H - (15)N相关谱,与标准HSQC和HMQC实验相比,其分辨率显著提高,谱重叠大大减少。(3)J(HNHα)可以通过三种独立的方式直接从峰位置揭示出来,从而实现内部一致性测试。此外,天然H(N)线宽可以很容易地从线形中提取出来。由于SOFAST原理,J维度所需的扫描宽度有限且相位循环短,数据积累迅速,每单位时间具有出色的灵敏度。该实验在本质上无结构的14 kDa蛋白质α-突触核蛋白上得到了验证。