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基于芯片的全自动化负模式纳米电喷雾质谱法分析丁香假单胞菌番茄致病变种DC3000中异源表达的果聚糖蔗糖酶所产生的低聚果糖。

Fully automated chip-based negative mode nanoelectrospray mass spectrometry of fructooligosaccharides produced by heterologously expressed levansucrase from Pseudomonas syringae pv. tomato DC3000.

作者信息

Visnapuu Triinu, Zamfir Alina D, Mosoarca Cristina, Stanescu Michaela D, Alamäe Tiina

机构信息

Institute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010 Tartu, Estonia.

出版信息

Rapid Commun Mass Spectrom. 2009 May;23(9):1337-46. doi: 10.1002/rcm.4007.

DOI:10.1002/rcm.4007
PMID:19337979
Abstract

Pseudomonas syringae pathovars possess multiple levansucrases with still unclear specific roles for bacteria. We have cloned and expressed three levansucrase genes, lsc1, lsc2 and lsc3, from P. syringae DC3000 in Escherichia coli. Levansucrases synthesize a high molecular weight fructan polymer, levan, from sucrose and in the case of some levansucrases, fructooligosaccharides (FOS) with potential prebiotic effects are also produced. The ability of purified Lsc3 protein of DC3000 to synthesize FOS was tested using prolonged incubation time and varied concentrations of sugar substrates. Thin-layer chromatography (TLC) analysis of reaction products disclosed formation of FOS from both sucrose and raffinose, revealing a new catalytic property for P. syringae levansucrases. In order to analyze Lsc3-produced FOS in underivatized form, we optimized a novel method recently introduced in carbohydrate research, based on fully automated chip-based nanoelectrospray ionization (nanoESI) high-capacity ion trap mass spectrometry (HCT-MS). Uding chip-based nanoESI MS in negative ion mode, FOS, with degrees of polymerization up to five, were detected in reaction mixtures of Lsc3 with sucrose and raffinose. For confirmation, further structural analysis by tandem mass spectrometry (MS/MS) employing collision-induced dissociation at low energies was performed. To validate the method, commercial inulin-derived FOS preparations Orafti P95 and Orafti Synergy1, which are currently used as prebiotics, were used as controls. By chip-based nanoESI HCT-MS, similar FOS distribution was observed in these reference mixtures. Thereby, the obtained data allowed us to postulate that FOS produced by the Lsc3 protein of P. syringae DC3000 may be prebiotic as well.

摘要

丁香假单胞菌致病型具有多种果聚糖蔗糖酶,其对细菌的具体作用仍不清楚。我们已从丁香假单胞菌DC3000中克隆并在大肠杆菌中表达了三个果聚糖蔗糖酶基因,lsc1、lsc2和lsc3。果聚糖蔗糖酶从蔗糖合成高分子量果聚糖聚合物——左聚糖,并且在某些果聚糖蔗糖酶的情况下,还会产生具有潜在益生元效应的低聚果糖(FOS)。使用延长的孵育时间和不同浓度的糖底物测试了DC3000纯化的Lsc3蛋白合成FOS的能力。反应产物的薄层色谱(TLC)分析表明,蔗糖和棉子糖均可形成FOS,这揭示了丁香假单胞菌果聚糖蔗糖酶的一种新催化特性。为了分析未衍生化形式的Lsc3产生的FOS,我们优化了一种最近在碳水化合物研究中引入的新方法,该方法基于全自动芯片纳米电喷雾电离(nanoESI)高容量离子阱质谱(HCT-MS)。在负离子模式下使用基于芯片的nanoESI MS,在Lsc3与蔗糖和棉子糖的反应混合物中检测到聚合度高达五的FOS。为进行确认,采用低能量碰撞诱导解离的串联质谱(MS/MS)进行了进一步的结构分析。为验证该方法,将目前用作益生元的商业菊粉衍生FOS制剂Orafti P95和Orafti Synergy1用作对照。通过基于芯片的nanoESI HCT-MS,在这些参考混合物中观察到了相似的FOS分布。因此,获得的数据使我们推测丁香假单胞菌DC3000的Lsc3蛋白产生的FOS也可能是益生元。

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