Chan B S, Court D A, Vierula P J, Bertrand H
Department of Microbiology, University of Guelph, Ontario, Canada.
Curr Genet. 1991 Aug;20(3):225-37. doi: 10.1007/BF00326237.
The nucleotide sequence of kalilo, a linear plasmid that induces senescence in Neurospora by integrating into the mitochondrial chromosome, reveals structural and genetic features germane to the unique properties of this element. Prominent features include: (1) very long perfect terminal inverted repeats of nucleotide sequences which are devoid of obvious genetic functions, but are unusually GC-rich near both ends of the linear DNA; (2) small imperfect palindromes that are situated at the termini of the plasmid and are cognate with the active sites for plasmid integration into mtDNA; (3) two large, non-overlapping open-reading frames, ORF-1 and ORF-2, which are located on opposite strands of the plasmid and potentially encode RNA and DNA polymerases, respectively, and (4) a set of imperfect palindromes that coincide with similar structures that have been detected at more or less identical locations in the nucleotide sequences of other linear mitochondrial plasmids. The nucleotide sequence does not reveal a distinct gene that codes for the protein that is attached to the ends of the plasmid. However, a 335-amino acid, cryptic, N-terminal domain of the putative DNA polymerase might function as the terminal protein. Although the plasmid has been co-purified with nuclei and mitochondria, its nucleotide composition and codon usage indicate that it is a mitochondrial genetic element.
卡里洛是一种线性质粒,通过整合到线粒体染色体中可诱导粗糙脉孢菌衰老,其核苷酸序列揭示了与该元件独特性质相关的结构和遗传特征。显著特征包括:(1)核苷酸序列的非常长的完美末端反向重复序列,这些序列缺乏明显的遗传功能,但在线性DNA的两端附近富含GC;(2)位于质粒末端的小的不完美回文序列,它们与质粒整合到线粒体DNA的活性位点同源;(3)两个大的、不重叠的开放阅读框,即ORF-1和ORF-2,它们位于质粒的相反链上,分别可能编码RNA聚合酶和DNA聚合酶,以及(4)一组不完美回文序列,与在其他线性线粒体质粒的核苷酸序列中或多或少相同位置检测到的类似结构一致。核苷酸序列未揭示编码附着在质粒末端蛋白质的独特基因。然而,推测的DNA聚合酶的一个335个氨基酸的隐蔽N端结构域可能作为末端蛋白发挥作用。尽管该质粒已与细胞核和线粒体共纯化,但其核苷酸组成和密码子使用表明它是一种线粒体遗传元件。