• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

处于关闭构象的全长KcsA的晶体结构。

Crystal structure of full-length KcsA in its closed conformation.

作者信息

Uysal Serdar, Vásquez Valeria, Tereshko Valentina, Esaki Kaori, Fellouse Frederic A, Sidhu Sachdev S, Koide Shohei, Perozo Eduardo, Kossiakoff Anthony

机构信息

Department of Biochemistry and Molecular Biology, and Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA.

出版信息

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6644-9. doi: 10.1073/pnas.0810663106. Epub 2009 Apr 3.

DOI:10.1073/pnas.0810663106
PMID:19346472
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2672561/
Abstract

KcsA is a proton-activated, voltage-modulated K(+) channel that has served as the archetype pore domain in the Kv channel superfamily. Here, we have used synthetic antigen-binding fragments (Fabs) as crystallographic chaperones to determine the structure of full-length KcsA at 3.8 A, as well as that of its isolated C-terminal domain at 2.6 A. The structure of the full-length KcsA-Fab complex reveals a well-defined, 4-helix bundle that projects approximately 70 A toward the cytoplasm. This bundle promotes a approximately 15 degree bending in the inner bundle gate, tightening its diameter and shifting the narrowest point 2 turns of helix below. Functional analysis of the full-length KcsA-Fab complex suggests that the C-terminal bundle remains whole during gating. We suggest that this structure likely represents the physiologically relevant closed conformation of KcsA.

摘要

KcsA是一种质子激活、电压调节的钾离子通道,它是Kv通道超家族中孔结构域的原型。在此,我们使用合成抗原结合片段(Fabs)作为晶体学伴侣,以3.8埃的分辨率确定全长KcsA的结构,以及以2.6埃的分辨率确定其分离的C末端结构域的结构。全长KcsA-Fab复合物的结构揭示了一个明确的4螺旋束,该螺旋束向细胞质方向突出约70埃。这个螺旋束促使内部束门产生约15度的弯曲,收紧其直径并将最窄点向下移动2圈螺旋。对全长KcsA-Fab复合物的功能分析表明,C末端螺旋束在门控过程中保持完整。我们认为这种结构可能代表了KcsA生理相关的关闭构象。

相似文献

1
Crystal structure of full-length KcsA in its closed conformation.处于关闭构象的全长KcsA的晶体结构。
Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6644-9. doi: 10.1073/pnas.0810663106. Epub 2009 Apr 3.
2
Influence of C-terminal protein domains and protein-lipid interactions on tetramerization and stability of the potassium channel KcsA.C 端蛋白结构域和蛋白-脂质相互作用对钾通道 KcsA 四聚化及稳定性的影响
Biochemistry. 2004 Nov 30;43(47):14924-31. doi: 10.1021/bi048889+.
3
NMR study of the tetrameric KcsA potassium channel in detergent micelles.在去污剂胶束中对四聚体KcsA钾通道的核磁共振研究。
Protein Sci. 2006 Apr;15(4):684-98. doi: 10.1110/ps.051954706. Epub 2006 Mar 7.
4
Targeted molecular dynamics (TMD) of the full-length KcsA potassium channel: on the role of the cytoplasmic domain in the opening process.靶向分子动力学(TMD)全长度 KcsA 钾通道:细胞质结构域在开放过程中的作用。
J Mol Model. 2013 Apr;19(4):1651-66. doi: 10.1007/s00894-012-1726-3. Epub 2013 Jan 5.
5
Structural basis for the coupling between activation and inactivation gates in K(+) channels.钾通道激活和失活门耦联的结构基础。
Nature. 2010 Jul 8;466(7303):272-5. doi: 10.1038/nature09136.
6
Structural characterization and pH-induced conformational transition of full-length KcsA.全长KcsA的结构表征及pH诱导的构象转变
Biophys J. 2006 Mar 1;90(5):1752-66. doi: 10.1529/biophysj.105.071175. Epub 2005 Dec 9.
7
Role of water molecules in the KcsA protein channel by molecular dynamics calculations.通过分子动力学计算研究水分子在KcsA蛋白通道中的作用
Phys Chem Chem Phys. 2005 Dec 21;7(24):4138-45. doi: 10.1039/b508281a. Epub 2005 Oct 6.
8
Functional equilibrium of the KcsA structure revealed by NMR.NMR 揭示 KcsA 结构的功能平衡。
J Biol Chem. 2012 Nov 16;287(47):39634-41. doi: 10.1074/jbc.M112.401265. Epub 2012 Sep 28.
9
Structural mechanism of C-type inactivation in K(+) channels.钾离子通道 C 型失活的结构机制。
Nature. 2010 Jul 8;466(7303):203-8. doi: 10.1038/nature09153.
10
Sequence-function analysis of the K+-selective family of ion channels using a comprehensive alignment and the KcsA channel structure.利用全面比对和KcsA通道结构对钾离子选择性离子通道家族进行序列-功能分析。
Biophys J. 2003 May;84(5):2929-42. doi: 10.1016/S0006-3495(03)70020-4.

引用本文的文献

1
Mediation of mammalian olfactory response by presence of odor-evoked potassium current.气味诱发的钾电流介导哺乳动物的嗅觉反应。
Front Allergy. 2024 Oct 16;5:1478529. doi: 10.3389/falgy.2024.1478529. eCollection 2024.
2
Conformational Dynamic Studies of Prokaryotic Potassium Channels Explored by Homo-FRET Methodologies.原核钾通道构象动力学研究的同型荧光共振能量转移方法探索。
Methods Mol Biol. 2024;2796:35-72. doi: 10.1007/978-1-0716-3818-7_3.
3
Cardiolipin binding enhances KcsA channel gating via both its specific and dianion-monoanion interchangeable sites.心磷脂结合通过其特异性位点和双阴离子-单阴离子可互换位点增强KcsA通道门控。
iScience. 2023 Nov 14;26(12):108471. doi: 10.1016/j.isci.2023.108471. eCollection 2023 Dec 15.
4
Anionic Phospholipids Shift the Conformational Equilibrium of the Selectivity Filter in the KcsA Channel to the Conductive Conformation: Predicted Consequences on Inactivation.阴离子磷脂将KcsA通道中选择性过滤器的构象平衡转移至导电构象:对失活的预测结果。
Biomedicines. 2023 May 5;11(5):1376. doi: 10.3390/biomedicines11051376.
5
Bacterial spore germination receptors are nutrient-gated ion channels.细菌孢子发芽受体是营养门控离子通道。
Science. 2023 Apr 28;380(6643):387-391. doi: 10.1126/science.adg9829. Epub 2023 Apr 27.
6
Central cavity dehydration as a gating mechanism of potassium channels.中央腔脱水作为钾通道的门控机制。
Nat Commun. 2023 Apr 17;14(1):2178. doi: 10.1038/s41467-023-37531-8.
7
Molecular Events behind the Selectivity and Inactivation Properties of Model NaK-Derived Ion Channels.模型 NaK 衍生离子通道的选择性和失活特性背后的分子事件。
Int J Mol Sci. 2022 Aug 17;23(16):9246. doi: 10.3390/ijms23169246.
8
High-Resolution Magic Angle Spinning NMR of KcsA in Liposomes: The Highly Mobile C-Terminus.高分辨率魔角旋转 NMR 研究脂质体中的 KcsA:高度移动的 C 末端。
Biomolecules. 2022 Aug 15;12(8):1122. doi: 10.3390/biom12081122.
9
Protein Design: From the Aspect of Water Solubility and Stability.蛋白质设计:从水溶性和稳定性方面考虑。
Chem Rev. 2022 Sep 28;122(18):14085-14179. doi: 10.1021/acs.chemrev.1c00757. Epub 2022 Aug 3.
10
Studying KcsA Channel Clustering Using Single Channel Voltage-Clamp Fluorescence Imaging.使用单通道电压钳荧光成像研究KcsA通道聚类
Front Physiol. 2022 Jun 3;13:863375. doi: 10.3389/fphys.2022.863375. eCollection 2022.

本文引用的文献

1
X-ray structure of a prokaryotic pentameric ligand-gated ion channel.原核五聚体配体门控离子通道的X射线结构
Nature. 2008 Mar 20;452(7185):375-9. doi: 10.1038/nature06717. Epub 2008 Mar 5.
2
Global twisting motion of single molecular KcsA potassium channel upon gating.门控时单个分子KcsA钾通道的整体扭转运动。
Cell. 2008 Jan 11;132(1):67-78. doi: 10.1016/j.cell.2007.11.040.
3
Synthetic antibodies for specific recognition and crystallization of structured RNA.用于特异性识别和结晶结构化RNA的合成抗体。
Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):82-7. doi: 10.1073/pnas.0709082105. Epub 2007 Dec 27.
4
A quantitative description of KcsA gating I: macroscopic currents.KcsA通道门控的定量描述I:宏观电流
J Gen Physiol. 2007 Nov;130(5):465-78. doi: 10.1085/jgp.200709843. Epub 2007 Oct 15.
5
Conformational dynamics of the KcsA potassium channel governs gating properties.KcsA钾通道的构象动力学决定门控特性。
Nat Struct Mol Biol. 2007 Nov;14(11):1089-95. doi: 10.1038/nsmb1311. Epub 2007 Oct 7.
6
High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries.从高度功能性的简约噬菌体展示文库中高通量生成合成抗体。
J Mol Biol. 2007 Nov 2;373(4):924-40. doi: 10.1016/j.jmb.2007.08.005. Epub 2007 Aug 19.
7
Characterization of the C-terminal domain of a potassium channel from Streptomyces lividans (KcsA).来自淡紫青霉的钾通道(KcsA)C端结构域的表征
J Biol Chem. 2007 Oct 5;282(40):29163-9. doi: 10.1074/jbc.M703277200. Epub 2007 Aug 10.
8
Cross talk between activation and slow inactivation gates of Shaker potassium channels.摇椅式钾通道激活门与缓慢失活门之间的相互作用。
J Gen Physiol. 2006 Nov;128(5):547-59. doi: 10.1085/jgp.200609644. Epub 2006 Oct 16.
9
Molecular determinants of gating at the potassium-channel selectivity filter.钾通道选择性过滤器门控的分子决定因素。
Nat Struct Mol Biol. 2006 Apr;13(4):311-8. doi: 10.1038/nsmb1069. Epub 2006 Mar 12.
10
Voltage-dependent gating at the KcsA selectivity filter.钾离子通道(KcsA)选择性过滤器上的电压依赖性门控。
Nat Struct Mol Biol. 2006 Apr;13(4):319-22. doi: 10.1038/nsmb1070. Epub 2006 Mar 12.