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马肝醇脱氢酶的底物特异性和立体选择性。对作为天然和活性位点特异性钴(II)取代酶底物的直链、无环仲醇和酮的催化循环的结合和活化参数进行动力学评估。

Substrate specificity and stereoselectivity of horse liver alcohol dehydrogenase. Kinetic evaluation of binding and activation parameters controlling the catalytic cycles of unbranched, acyclic secondary alcohols and ketones as substrates of the native and active-site-specific Co(II)-substituted enzyme.

作者信息

Adolph H W, Maurer P, Schneider-Bernlöhr H, Sartorius C, Zeppezauer M

机构信息

Fachrichtung Biochemie, Universität des Saarlandes, Saarbrücken, Federal Republic of Germany.

出版信息

Eur J Biochem. 1991 Nov 1;201(3):615-25. doi: 10.1111/j.1432-1033.1991.tb16322.x.

Abstract
  1. The steady-state parameters kcat and Km and the rate constants of hydride transfer for the substrates isopropanol/acetone; (S)-2-butanol, (R)-2-butanol/2-butanone; (S)-2-pentanol, (R)-2-pentanol/2-pentanone; 3-pentanol/3-pentanone; (S)-2-octanol and (R)-2-octanol have been determined for the native Zn(II)-containing horse-liver alcohol dehydrogenase (LADH) and the specific active-site-substituted Co(II)LADH. 2. A combined evaluation of steady-state kinetic data and rate constants obtained from stopped-flow measurements, allowed the determination of all rate constants of the following ordered bi-bi mechanism: E in equilibrium E.NAD in equilibrium E.NAD.R1R2 CHOH in equilibrium E.NADH.R1R2CO in equilibrium E.NADH in equilibrium E. 3. On the basis of the different substrate specificities of LADH and yeast alcohol dehydrogenase (YADH), a procedure has been developed to evaluate the enantiomeric product composition of ketone reductions. 2-Butanone and 2-pentanone reductions revealed (S)-2-butanol (86%) and (S)-2-pentanol (95%) as the major products. 4. The observed enantioselectivity implies the existence of two productive ternary complexes; E.NADH.(pro-S) 2-butanone and E.NADH.(pro-R) 2-butanone. All rate constants describing the kinetic pathways of the system (S)-2-butanol, (R)-2-butanol/2-butanone have been determined. These data have been used to estimate the expected enantiomer product composition of 2-butanone reductions using apparent kcat/Km values for the two different ternary-complex configurations of 2-butanone. Additionally, these data have been used for computer simulations of the corresponding reaction cycles. Calculated, simulated and experimental data were found to be in good agreement. Thus, the system (S)-2-butanol, (R)-2-butanol/2-butanone is the first example of a LADH-catalyzed reaction for which the stereochemical course could be described in terms of rate constants of the underlying mechanism. 5. The effects of Co(II) substitution on the different steps of the kinetic pathway have been investigated. The free energy of activation is higher for alcohol oxidation and lower for ketone reduction when catalyzed by Co(II)LADH in comparison to Zn(II)LADH. However, the free energies of binding are affected by metal substitution in such a way that the enantioselectivity of ketone reduction is not significantly changed by the substitution of Co(II) for Zn(II). 6. Evaluation of the data shows that substrate specificity and stereoselectivity result from combination of the free energies of binding and activation, with differences in binding energies as the dominating factors. In this regard, the interactions of substrate molecules with the protein moiety are dominant over the interactions with the catalytic metal ion.
摘要
  1. 已测定了天然含锌(II)的马肝醇脱氢酶(LADH)和特定活性位点取代的钴(II)LADH对于底物异丙醇/丙酮、(S)-2-丁醇、(R)-2-丁醇/2-丁酮、(S)-2-戊醇、(R)-2-戊醇/2-戊酮、3-戊醇/3-戊酮、(S)-2-辛醇和(R)-2-辛醇的稳态参数kcat和Km以及氢化物转移的速率常数。2. 对稳态动力学数据和从停流测量获得的速率常数进行综合评估,确定了以下有序双底物双产物机制的所有速率常数:E与E.NAD平衡,E.NAD与E.NAD.R1R2CHOH平衡,E.NADH.R1R2CO与E.NADH平衡,E.NADH与E平衡。3. 根据LADH和酵母醇脱氢酶(YADH)不同的底物特异性,开发了一种评估酮还原对映体产物组成的方法。2-丁酮和2-戊酮还原反应显示,主要产物为(S)-2-丁醇(86%)和(S)-2-戊醇(95%)。4. 观察到的对映选择性意味着存在两种有活性的三元复合物;E.NADH.(pro-S)2-丁酮和E.NADH.(pro-R)2-丁酮。已确定了描述(S)-2-丁醇、(R)-2-丁醇/2-丁酮体系动力学途径的所有速率常数。这些数据已用于使用2-丁酮两种不同三元复合物构型的表观kcat/Km值来估计2-丁酮还原反应的预期对映体产物组成。此外,这些数据已用于相应反应循环的计算机模拟。计算值、模拟值和实验值吻合良好。因此,(S)-2-丁醇、(R)-2-丁醇/2-丁酮体系是LADH催化反应的第一个例子,其立体化学过程可以根据潜在机制的速率常数来描述。5. 研究了钴(II)取代对动力学途径不同步骤的影响。与锌(II)LADH相比,钴(II)LADH催化醇氧化时的活化自由能更高,催化酮还原时的活化自由能更低。然而,结合自由能受金属取代的影响,使得用钴(II)取代锌(II)不会显著改变酮还原的对映选择性。6. 数据评估表明,底物特异性和立体选择性是结合自由能和活化自由能共同作用的结果,其中结合能的差异是主要因素。在这方面,底物分子与蛋白质部分的相互作用比与催化金属离子的相互作用更占主导地位。

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