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与ectoine结合的UehA晶体结构——与其他TRAP-T结合蛋白的比较

The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins.

作者信息

Lecher Justin, Pittelkow Marco, Zobel Silke, Bursy Jan, Bönig Tobias, Smits Sander H J, Schmitt Lutz, Bremer Erhard

机构信息

Institute of Biochemistry, Heinrich-Heine-University Duesseldorf, Germany.

出版信息

J Mol Biol. 2009 May 29;389(1):58-73. doi: 10.1016/j.jmb.2009.03.077. Epub 2009 Apr 10.

Abstract

Substrate-binding proteins or extracellular solute receptors (ESRs) are components of both ABC (ATP binding cassette) and TRAP-T (tripartite ATP-independent periplasmic transporter). The TRAP-T system UehABC from Silicibacter pomeroyi DSS-3 imports the compatible solutes ectoine and 5-hydroxyectoine as nutrients. UehA, the ESR of the UehABC operon, binds both ectoine and 5-hydroxyectoine with high affinity (K(d) values of 1.4+/-0.1 and 1.1+/-0.1 microM, respectively) and delivers them to the TRAP-T complex. The crystal structure of UehA in complex with ectoine was determined at 2.9-A resolution and revealed an overall fold common for all ESR proteins from TRAP systems determined so far. A comparison of the recently described structure of TeaA from Halomonas elongata and an ectoine-binding protein (EhuB) from an ABC transporter revealed a conserved ligand binding mode that involves both directed and cation-pi interactions. Furthermore, a comparison with other known TRAP-T ESRs revealed a helix that might act as a selectivity filter imposing restraints on the ESRs that fine-tune ligand recognition and binding and finally might determine the selection of the cognate substrate.

摘要

底物结合蛋白或细胞外溶质受体(ESR)是ABC(ATP结合盒)和TRAP-T(三部分ATP非依赖性周质转运体)的组成部分。来自波氏硅杆菌DSS-3的TRAP-T系统UehABC将相容性溶质四氢嘧啶和5-羟基四氢嘧啶作为营养物质进行转运。UehABC操纵子的ESR即UehA,能以高亲和力(解离常数K(d)值分别为1.4±0.1和1.1±0.1微摩尔)结合四氢嘧啶和5-羟基四氢嘧啶,并将它们递送至TRAP-T复合体。UehA与四氢嘧啶复合物的晶体结构在2.9埃分辨率下得以确定,揭示了与迄今所确定的所有来自TRAP系统的ESR蛋白共有的整体折叠结构。对最近描述的来自嗜盐单胞菌的TeaA结构与来自ABC转运体的一种四氢嘧啶结合蛋白(EhuB)的比较,揭示了一种保守的配体结合模式,该模式涉及定向相互作用和阳离子-π相互作用。此外,与其他已知的TRAP-T ESR的比较揭示了一个螺旋,它可能作为一个选择性过滤器,对ESR施加限制,从而微调配体识别和结合,最终可能决定同源底物的选择。

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