Jumas-Bilak Estelle, Roudière Laurent, Marchandin Hélène
Université Montpellier 1, Laboratoire de Bactériologie-Virologie, EA 3755, Faculté de Pharmacie, 15, Avenue Charles Flahault, BP 14491, 34060 Montpellier Cedex 5, France.
Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1028-35. doi: 10.1099/ijs.0.006718-0.
The number of bacterial phyla has greatly increased in the past decade. Among them, a candidate division named 'Synergistes' was proposed in a phylogenetic study on the global diversity of bacteria. We previously described the genus Jonquetella and suggested that it belonged to this not yet well-delineated candidate phylum. 16S rRNA gene based-phylogeny studies were conducted using four reconstruction methods and 599 sequences forming five datasets were used in an alternative treeing approach. These analyses indicated that the genera Aminiphilus, Aminobacterium, Aminomonas, Anaerobaculum, Dethiosulfovibrio, Jonquetella, Synergistes, Thermanaerovibrio and Thermovirga should be grouped in the same high-level taxon. This taxon was shown to be a phylum-rank lineage in the domain Bacteria and, because of the prior use of the name Synergistes for a genus, the name 'Synergistetes' is proposed for this candidate phylum. We also propose an emended delineation of the phylum 'Deferribacteres', which is now only represented by the family Deferribacteriaceae. The emended family Syntrophomonadaceae is limited to the genera Pelospora, Syntrophomonas, Syntrophothermus and Thermosyntropha.
在过去十年中,细菌门类的数量大幅增加。其中,在一项关于细菌全球多样性的系统发育研究中提出了一个名为“协同菌属(Synergistes)”的候选分类单元。我们之前描述了琼凯氏菌属(Jonquetella),并表明它属于这个尚未明确界定的候选门。使用四种重建方法进行了基于16S rRNA基因的系统发育研究,并采用另一种建树方法,使用了形成五个数据集的599个序列。这些分析表明,嗜氨基菌属(Aminiphilus)、氨基杆菌属(Aminobacterium)、氨基单胞菌属(Aminomonas)、厌氧芽孢杆菌属(Anaerobaculum)、脱硫酸弧菌属(Dethiosulfovibrio)、琼凯氏菌属、协同菌属、嗜热厌氧弧菌属(Thermanaerovibrio)和嗜热病毒菌属(Thermovirga)应归为同一高级分类单元。该分类单元在细菌域中显示为一个门级谱系,并且由于之前已将“协同菌属”用作一个属名,因此为这个候选门提议使用“协同菌门(Synergistetes)”这一名称。我们还提议对“脱铁杆菌门(Deferribacteres)”进行修订后的界定,目前该门仅由脱铁杆菌科(Deferribacteriaceae)代表。修订后的互营单胞菌科(Syntrophomonadaceae)仅限于孢泥菌属(Pelospora)、互营单胞菌属(Syntrophomonas)、互营嗜热菌属(Syntrophothermus)和嗜热互营菌属(Thermosyntropha)。