Vaishampayan Parag, Miyashita Mika, Ohnishi Akihiro, Satomi Masataka, Rooney Alejandro, La Duc Myron T, Venkateswaran Kasthuri
Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA.
Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1094-9. doi: 10.1099/ijs.0.006098-0.
Strains of aerobic, Gram-positive, rod-shaped, round-spore-forming bacteria were isolated from different geographical locations and a subsequent polyphasic study was undertaken to clarify the taxonomic position of the round-spore-forming isolates strain KSC-SF6g(T), strain M32 and strain NBRC 12622. 16S rRNA gene sequence similarities demonstrated that these strains were most closely affiliated with Bacillus pycnus NRRL NRS-1691(T) (98 %), with species of Kurthia (96 %) and Viridibacillus (94-96 %) as the next nearest relatives. However, while DNA-DNA hybridization studies showed approx. 70 % reassociation among strains KSC-SF6g(T), M32 and NBRC 12622, DNA-DNA hybridization values between these strains and B. pycnus NRRL NRS-1691(T) never exceeded 13 %. Differences in the molecular structure of the cell-wall peptidoglycan could not differentiate these strains sufficiently from other closely related genera (Viridibacillus and Kurthia). However, Lys-Asp was present in strains KSC-SF6g(T), M32 and NBRC 12622, whereas l-Lys-d-Glu was reported in B. pycnus NRRL NRS-1691(T). The menaquinone MK-7 was dominant in strains KSC-SF6g(T), M32 and NBRC 12622 and members of the genus Kurthia, whereas MK-8 was abundant in Viridibacillus species. Strains KSC-SF6g(T), M32 and NBRC 12622 exhibited fatty acid profiles consisting of major amounts of anteiso-C(15 : 0) ( approximately 50 %) and iso-C(15 : 0) ( approximately 25 %) and moderate amounts of anteiso-C(17 : 0) ( approximately 7 %), which discriminated them from closely related B. pycnus NRRL NRS-1691(T) and species of Viridibacillus (iso-C(15 : 0); 46-74 %). The authors propose that strains KSC-SF6g(T), M32 and NBRC 12622 and B. pycnus NRRL NRS-1691(T) be reclassified into a separate genus based on clear-cut differences in discriminative taxonomic markers and the distant placement of B. pycnus and the novel strains described herein from other species of this clade according to current 16S rRNA gene sequence-based relatedness ( approximately 4 % difference in sequence). We propose the placement of these isolates into the novel genus Rummeliibacillus gen. nov. For the new taxon comprising strains KSC-SF6g(T), M32 and NBRC 12622, we propose the name Rummeliibacillus stabekisii gen. nov., sp. nov. (the type species of Rummeliibacillus), represented by the type strain KSC-SF6g(T) (=NRRL B-51320(T) =NBRC 104870(T)). In addition, Bacillus pycnus, which bears traits distinct from other round-spore-forming species [i.e. absence of growth at high NaCl (7 %), positive reaction for gelatin liquefaction], is reclassified as Rummeliibacillus pycnus comb. nov. (type strain JCM 11075(T) =NRRL NRS-1691(T)) based on phylogenetic affiliations and phenotypic characterization.
从不同地理位置分离出需氧、革兰氏阳性、杆状、形成圆形孢子的细菌菌株,并进行了后续的多相研究,以阐明形成圆形孢子的分离菌株KSC-SF6g(T)、菌株M32和菌株NBRC 12622的分类地位。16S rRNA基因序列相似性表明,这些菌株与致密芽孢杆菌NRRL NRS-1691(T)关系最为密切(98%),其次是库特氏菌属(96%)和绿色芽孢杆菌属(94 - 96%)的物种。然而,虽然DNA-DNA杂交研究表明菌株KSC-SF6g(T)、M32和NBRC 12622之间的重结合率约为70%,但这些菌株与致密芽孢杆菌NRRL NRS-1691(T)之间的DNA-DNA杂交值从未超过13%。细胞壁肽聚糖分子结构的差异不足以将这些菌株与其他密切相关的属(绿色芽孢杆菌属和库特氏菌属)充分区分开来。然而,菌株KSC-SF6g(T)、M32和NBRC 12622中存在Lys-Asp,而致密芽孢杆菌NRRL NRS-1691(T)中报道的是l-Lys-d-Glu。甲基萘醌MK-7在菌株KSC-SF6g(T)、M32和NBRC 12622以及库特氏菌属成员中占主导地位,而MK-8在绿色芽孢杆菌属物种中含量丰富。菌株KSC-SF6g(T)、M32和NBRC 12622的脂肪酸谱主要由大量的anteiso-C(15 : 0)(约50%)和iso-C(15 : 0)(约25%)以及适量的anteiso-C(17 : 0)(约7%)组成,这使其与密切相关的致密芽孢杆菌NRRL NRS-1691(T)和绿色芽孢杆菌属物种(iso-C(15 : 0);46 - 74%)区分开来。作者建议,基于鉴别分类标记的明显差异以及根据当前基于16S rRNA基因序列的亲缘关系(序列差异约4%),致密芽孢杆菌NRRL NRS-1691(T)以及菌株KSC-SF6g(T)、M32和NBRC 12622应重新分类为一个单独的属。我们建议将这些分离株归入新属鲁梅利芽孢杆菌属(Rummeliibacillus gen. nov.)。对于包含菌株KSC-SF6g(T)、M32和NBRC 12622的新分类单元,我们提议命名为鲁梅利芽孢杆菌斯塔贝基斯菌(Rummeliibacillus stabekisii gen. nov., sp. nov.)(鲁梅利芽孢杆菌属的模式种),由模式菌株KSC-SF6g(T)(=NRRL B-51320(T) =NBRC 104870(T))代表。此外,致密芽孢杆菌具有与其他形成圆形孢子的物种不同的特征[即高NaCl(7%)条件下不生长,明胶液化呈阳性反应],基于系统发育关系和亲表型特征,将其重新分类为鲁梅利芽孢杆菌致密亚种(Rummeliibacillus pycnus comb. nov.)(模式菌株JCM 11075(T) =NRRL NRS-1691(T))。