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利用串联重复序列分析来自巴西亚马逊不同地区的间日疟原虫分离株的遗传变异性。

Analysis of genetic variability of Plasmodium vivax isolates from different Brazilian Amazon areas using tandem repeats.

作者信息

Rezende Antônio M, Tarazona-Santos Eduardo, Couto Alvaro D' Almeida, Fontes Cór Jésus F, De Souza José Maria, Carvalho Luzia H, Brito Cristiana F A

机构信息

Laboratory of Malaria, Centro de Pesquisas René Rachou/Fiocruz, Belo Horizonte, Brazil.

出版信息

Am J Trop Med Hyg. 2009 May;80(5):729-33.

Abstract

Few genetic markers have been described to analyze populations of Plasmodium vivax. The genetic variability of P. vivax has been analyzed mainly among isolates taken from areas ranging from hyper- to holoendemic areas. These studies of genetic variability have neglected many areas with different epidemiologic profiles. The purpose of this study was to analyze the genetic variability of P. vivax isolates from four different Brazilian Amazon areas. We chose to study the five most polymorphic tandem repeats (TRs) identified so far. All TRs studied were polymorphic in at least one studied population, with a modal allele at nearly all loci. Expected heterozygosity ranged from 0.462 to 0.666 and did not correlate with the repeat array length. The genetic distances among the populations varied from 0.027 to 0.241, and did not correlate with their geographic separation. Tandem repeats identified in P. vivax isolates failed to allow geographic clustering.

摘要

很少有遗传标记被描述用于分析间日疟原虫群体。间日疟原虫的遗传变异性主要是在从高流行区到全流行区采集的分离株中进行分析的。这些遗传变异性研究忽略了许多具有不同流行病学特征的地区。本研究的目的是分析来自巴西亚马逊四个不同地区的间日疟原虫分离株的遗传变异性。我们选择研究迄今为止鉴定出的五个多态性最高的串联重复序列(TRs)。所有研究的TRs在至少一个研究群体中是多态性的,几乎所有位点都有一个模式等位基因。预期杂合度范围为0.462至0.666,与重复序列长度无关。群体之间的遗传距离从0.027到0.241不等,与它们的地理隔离无关。在间日疟原虫分离株中鉴定出的串联重复序列未能实现地理聚类。

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