• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

底物结合调节氨基酸反向转运体的构象灵活性和动力学稳定性。

Substrate binding tunes conformational flexibility and kinetic stability of an amino acid antiporter.

作者信息

Bippes Christian A, Zeltina Antra, Casagrande Fabio, Ratera Merce, Palacin Manuel, Muller Daniel J, Fotiadis Dimitrios

机构信息

Biotechnology Center, Technische Universität Dresden, D-01307 Dresden, Germany.

出版信息

J Biol Chem. 2009 Jul 10;284(28):18651-63. doi: 10.1074/jbc.M109.004267. Epub 2009 May 6.

DOI:10.1074/jbc.M109.004267
PMID:19419962
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2707244/
Abstract

We used single molecule dynamic force spectroscopy to unfold individual serine/threonine antiporters SteT from Bacillus subtilis. The unfolding force patterns revealed interactions and energy barriers that stabilized structural segments of SteT. Substrate binding did not establish strong localized interactions but appeared to be facilitated by the formation of weak interactions with several structural segments. Upon substrate binding, all energy barriers of the antiporter changed thereby describing the transition from brittle mechanical properties of SteT in the unbound state to structurally flexible conformations in the substrate-bound state. The lifetime of the unbound state was much shorter than that of the substrate-bound state. This leads to the conclusion that the unbound state of SteT shows a reduced conformational flexibility to facilitate specific substrate binding and a reduced kinetic stability to enable rapid switching to the bound state. In contrast, the bound state of SteT showed an increased conformational flexibility and kinetic stability such as required to enable transport of substrate across the cell membrane. This result supports the working model of antiporters in which alternate substrate access from one to the other membrane surface occurs in the substrate-bound state.

摘要

我们使用单分子动态力谱技术来展开来自枯草芽孢杆菌的单个丝氨酸/苏氨酸反向转运蛋白SteT。展开力模式揭示了稳定SteT结构片段的相互作用和能量屏障。底物结合并未建立强烈的局部相互作用,但似乎通过与几个结构片段形成弱相互作用而得到促进。底物结合后,反向转运蛋白的所有能量屏障都发生了变化,从而描述了从SteT在未结合状态下的脆性机械性能到底物结合状态下结构灵活构象的转变。未结合状态的寿命比底物结合状态的寿命短得多。这得出的结论是,SteT的未结合状态显示出降低的构象灵活性以促进特定底物结合,以及降低的动力学稳定性以实现快速切换到结合状态。相比之下,SteT的结合状态显示出增加的构象灵活性和动力学稳定性,这是使底物跨细胞膜运输所必需的。这一结果支持了反向转运蛋白的工作模型,即在底物结合状态下,底物从一个膜表面交替进入另一个膜表面。

相似文献

1
Substrate binding tunes conformational flexibility and kinetic stability of an amino acid antiporter.底物结合调节氨基酸反向转运体的构象灵活性和动力学稳定性。
J Biol Chem. 2009 Jul 10;284(28):18651-63. doi: 10.1074/jbc.M109.004267. Epub 2009 May 6.
2
Role of transmembrane domain 8 in substrate selectivity and translocation of SteT, a member of the L-amino acid transporter (LAT) family.跨膜结构域 8 在 SteT(L-氨基酸转运体(LAT)家族的一员)的底物选择性和易位中的作用。
J Biol Chem. 2010 Sep 10;285(37):28764-76. doi: 10.1074/jbc.M110.116632. Epub 2010 Jul 7.
3
Crystal structure of Ca2+/H+ antiporter protein YfkE reveals the mechanisms of Ca2+ efflux and its pH regulation.Ca2+/H+ 反向转运蛋白 YfkE 的晶体结构揭示了 Ca2+ 外排及其 pH 调节的机制。
Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11367-72. doi: 10.1073/pnas.1302515110. Epub 2013 Jun 24.
4
Substrate recognition and transport behavior analyses of amino acid antiporter with coarse-grained models.基于粗粒度模型的氨基酸反向转运体的底物识别与转运行为分析
Mol Biosyst. 2010 Dec;6(12):2430-8. doi: 10.1039/c005266c. Epub 2010 Sep 14.
5
Tet(L) and tet(K) tetracycline-divalent metal/H+ antiporters: characterization of multiple catalytic modes and a mutagenesis approach to differences in their efflux substrate and coupling ion preferences.Tet(L)和tet(K)四环素-二价金属/H⁺反向转运蛋白:多种催化模式的表征以及针对其外排底物和偶联离子偏好差异的诱变方法
J Bacteriol. 2002 Sep;184(17):4722-32. doi: 10.1128/JB.184.17.4722-4732.2002.
6
A conformational switch in a partially unwound helix selectively determines the pathway for substrate release from the carnitine/γ-butyrobetaine antiporter CaiT.部分展开螺旋中的构象转变选择性地决定了肉碱/γ-丁基甜菜碱反向转运蛋白 CaiT 从底物释放的途径。
J Biol Chem. 2012 Sep 14;287(38):31823-32. doi: 10.1074/jbc.M112.397364. Epub 2012 Jul 29.
7
Intracellular Ca regulation of H/Ca antiporter YfkE mediated by a Ca mini-sensor.细胞内 Ca 对 H/Ca 反向转运蛋白 YfkE 的调节作用由 Ca 微敏传感器介导。
Proc Natl Acad Sci U S A. 2020 May 12;117(19):10313-10321. doi: 10.1073/pnas.1918604117. Epub 2020 Apr 27.
8
Mutation of external glutamate residue reveals a new intermediate transport state and anion binding site in a CLC Cl/H antiporter.突变外谷氨酸残基揭示了 CLC Cl/H 反向转运体的一个新的中间转运状态和阴离子结合位点。
Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17345-17354. doi: 10.1073/pnas.1901822116. Epub 2019 Aug 13.
9
Structural biology: Last of the multidrug transporters.
Nature. 2010 Oct 21;467(7318):926-7. doi: 10.1038/467926a.
10
Substrate specificity of the aspartate:alanine antiporter (AspT) of Tetragenococcus halophilus in reconstituted liposomes.在重建的脂质体中,嗜热双歧杆菌天冬氨酸:丙氨酸逆向转运蛋白(AspT)的底物特异性。
J Biol Chem. 2011 Aug 19;286(33):29044-29052. doi: 10.1074/jbc.M111.260224. Epub 2011 Jun 30.

引用本文的文献

1
Substrate-binding guides individual melibiose permeases MelB to structurally soften and to destabilize cytoplasmic middle-loop C3.底物结合引导单个棉子糖渗透酶 MelB 结构软化和细胞质中环 C3 去稳定化。
Structure. 2023 Jan 5;31(1):58-67.e4. doi: 10.1016/j.str.2022.11.011. Epub 2022 Dec 15.
2
Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter.综合 AlphaFold2 和 DEER 研究 pH 依赖性 APC 转运蛋白构象动力学。
Proc Natl Acad Sci U S A. 2022 Aug 23;119(34):e2206129119. doi: 10.1073/pnas.2206129119. Epub 2022 Aug 15.
3
Insights into the Structure, Function, and Ligand Discovery of the Large Neutral Amino Acid Transporter 1, LAT1.解析大中性氨基酸转运蛋白 1(LAT1)的结构、功能和配体发现。
Int J Mol Sci. 2018 Apr 24;19(5):1278. doi: 10.3390/ijms19051278.
4
Integrative View of the Diversity and Evolution of SWEET and SemiSWEET Sugar Transporters.SWEET和半SWEET糖转运蛋白的多样性与进化的综合观点
Front Plant Sci. 2017 Dec 20;8:2178. doi: 10.3389/fpls.2017.02178. eCollection 2017.
5
Modulation of LAT1 (SLC7A5) transporter activity and stability by membrane cholesterol.通过膜胆固醇调节 LAT1(SLC7A5)转运体的活性和稳定性。
Sci Rep. 2017 Mar 8;7:43580. doi: 10.1038/srep43580.
6
Observing a lipid-dependent alteration in single lactose permeases.观察单个乳糖通透酶中脂质依赖性改变。
Structure. 2015 Apr 7;23(4):754-61. doi: 10.1016/j.str.2015.02.009. Epub 2015 Mar 19.
7
Substrate-induced changes in the structural properties of LacY.底物诱导 LacY 结构性质的变化。
Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):E1571-80. doi: 10.1073/pnas.1404446111. Epub 2014 Apr 7.
8
Atomic force microscopy: a multifaceted tool to study membrane proteins and their interactions with ligands.原子力显微镜:一种用于研究膜蛋白及其与配体相互作用的多面工具。
Biochim Biophys Acta. 2014 Jan;1838(1 Pt A):56-68. doi: 10.1016/j.bbamem.2013.04.011. Epub 2013 Apr 16.
9
Kinetic, energetic, and mechanical differences between dark-state rhodopsin and opsin.暗态视蛋白与视黄醛之间的动力学、能量学和力学差异。
Structure. 2013 Mar 5;21(3):426-37. doi: 10.1016/j.str.2013.01.011. Epub 2013 Feb 21.
10
Cholesterol increases kinetic, energetic, and mechanical stability of the human β2-adrenergic receptor.胆固醇增加了人β2-肾上腺素能受体的动力学、能量学和机械稳定性。
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):E3463-72. doi: 10.1073/pnas.1210373109. Epub 2012 Nov 14.

本文引用的文献

1
High-throughput single-molecule force spectroscopy for membrane proteins.用于膜蛋白的高通量单分子力谱技术
Nanotechnology. 2008 Sep 24;19(38):384014. doi: 10.1088/0957-4484/19/38/384014. Epub 2008 Aug 12.
2
The major amino acid transporter superfamily has a similar core structure as Na+-galactose and Na+-leucine transporters.主要氨基酸转运体超家族具有与钠-半乳糖和钠-亮氨酸转运体相似的核心结构。
Mol Membr Biol. 2008 Sep;25(6-7):567-70. doi: 10.1080/09687680802541177. Epub 2008 Nov 21.
3
Structure and molecular mechanism of a nucleobase-cation-symport-1 family transporter.核碱基-阳离子同向转运体-1家族转运蛋白的结构与分子机制
Science. 2008 Oct 31;322(5902):709-13. doi: 10.1126/science.1164440. Epub 2008 Oct 16.
4
Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.氨基酸/多胺/有机阳离子转运蛋白超家族成员的投射结构。
J Biol Chem. 2008 Nov 28;283(48):33240-8. doi: 10.1074/jbc.M806917200. Epub 2008 Sep 25.
5
Transducer binding establishes localized interactions to tune sensory rhodopsin II.换能器结合建立局部相互作用以调节感官视紫红质II。
Structure. 2008 Aug 6;16(8):1206-13. doi: 10.1016/j.str.2008.04.014.
6
Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms.耦合结合与蛋白质构象变化的动态能量景观视图:诱导契合与群体转移机制
Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11182-7. doi: 10.1073/pnas.0802524105. Epub 2008 Aug 4.
7
Crystal structure of a glutamate/aspartate binding protein complexed with a glutamate molecule: structural basis of ligand specificity at atomic resolution.与谷氨酸分子复合的谷氨酸/天冬氨酸结合蛋白的晶体结构:原子分辨率下配体特异性的结构基础。
J Mol Biol. 2008 Sep 26;382(1):99-111. doi: 10.1016/j.jmb.2008.06.091. Epub 2008 Jul 9.
8
Role of extracellular glutamic acids in the stability and energy landscape of bacteriorhodopsin.细胞外谷氨酸在细菌视紫红质稳定性和能量格局中的作用。
Biophys J. 2008 Oct;95(7):3407-18. doi: 10.1529/biophysj.108.131904. Epub 2008 Jul 11.
9
AFM: a nanotool in membrane biology.原子力显微镜:膜生物学中的一种纳米工具。
Biochemistry. 2008 Aug 5;47(31):7986-98. doi: 10.1021/bi800753x. Epub 2008 Jul 11.
10
Ins and outs of major facilitator superfamily antiporters.主要易化子超家族反向转运蛋白的来龙去脉
Annu Rev Microbiol. 2008;62:289-305. doi: 10.1146/annurev.micro.61.080706.093329.