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蛋白质隔离在基因网络中产生灵活的超敏感反应。

Protein sequestration generates a flexible ultrasensitive response in a genetic network.

作者信息

Buchler Nicolas E, Cross Frederick R

机构信息

The Rockefeller University, New York, NY 10065, USA.

出版信息

Mol Syst Biol. 2009;5:272. doi: 10.1038/msb.2009.30. Epub 2009 May 19.

Abstract

Ultrasensitive responses are crucial for cellular regulation. Protein sequestration, where an active protein is bound in an inactive complex by an inhibitor, can potentially generate ultrasensitivity. Here, in a synthetic genetic circuit in budding yeast, we show that sequestration of a basic leucine zipper transcription factor by a dominant-negative inhibitor converts a graded transcriptional response into a sharply ultrasensitive response, with apparent Hill coefficients up to 12. A simple quantitative model for this genetic network shows that both the threshold and the degree of ultrasensitivity depend upon the abundance of the inhibitor, exactly as we observed experimentally. The abundance of the inhibitor can be altered by simple mutation; thus, ultrasensitive responses mediated by protein sequestration are easily tuneable. Gene duplication of regulatory homodimers and loss-of-function mutations can create dominant negatives that sequester and inactivate the original regulator. The generation of flexible ultrasensitive responses is an unappreciated adaptive advantage that could explain the frequent evolutionary emergence of dominant negatives.

摘要

超敏反应对于细胞调节至关重要。蛋白质隔离,即一种活性蛋白被抑制剂结合在非活性复合物中,有可能产生超敏反应。在此,我们在芽殖酵母的一个合成遗传回路中表明,一种显性负性抑制剂对碱性亮氨酸拉链转录因子的隔离将分级转录反应转化为明显的超敏反应,表观希尔系数高达12。这个遗传网络的一个简单定量模型表明,阈值和超敏程度都取决于抑制剂的丰度,正如我们在实验中观察到的那样。抑制剂的丰度可以通过简单的突变来改变;因此,由蛋白质隔离介导的超敏反应很容易调节。调节性同二聚体的基因复制和功能丧失突变可以产生显性负性因子,它们会隔离并使原始调节因子失活。产生灵活的超敏反应是一种未被认识到的适应性优势,这可以解释显性负性因子在进化中频繁出现的现象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3065/2694680/a32ad3b12563/msb200930-f1.jpg

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