Peikon Ian D, Fitzsimmons Nathan A, Lebedev Mikhail A, Nicolelis Miguel A L
Department of Biomedical Engineering, Center for Neuroengineering, Duke University, Durham, NC 27710, USA.
J Neurosci Methods. 2009 Jun 15;180(2):224-33. doi: 10.1016/j.jneumeth.2009.03.010. Epub 2009 Mar 25.
Collection and analysis of limb kinematic data are essential components of the study of biological motion, including research into biomechanics, kinesiology, neurophysiology and brain-machine interfaces (BMIs). In particular, BMI research requires advanced, real-time systems capable of sampling limb kinematics with minimal contact to the subject's body. To answer this demand, we have developed an automated video tracking system for real-time tracking of multiple body parts in freely behaving primates. The system employs high-contrast markers painted on the animal's joints to continuously track the three-dimensional positions of their limbs during activity. Two-dimensional coordinates captured by each video camera are combined and converted to three-dimensional coordinates using a quadratic fitting algorithm. Real-time operation of the system is accomplished using direct memory access (DMA). The system tracks the markers at a rate of 52 frames per second (fps) in real-time and up to 100fps if video recordings are captured to be later analyzed off-line. The system has been tested in several BMI primate experiments, in which limb position was sampled simultaneously with chronic recordings of the extracellular activity of hundreds of cortical cells. During these recordings, multiple computational models were employed to extract a series of kinematic parameters from neuronal ensemble activity in real-time. The system operated reliably under these experimental conditions and was able to compensate for marker occlusions that occurred during natural movements. We propose that this system could also be extended to applications that include other classes of biological motion.
肢体运动学数据的采集与分析是生物运动研究的重要组成部分,包括生物力学、运动学、神经生理学和脑机接口(BMI)等方面的研究。特别是,BMI研究需要先进的实时系统,能够以最小程度接触受试者身体的方式对肢体运动学进行采样。为满足这一需求,我们开发了一种自动视频跟踪系统,用于实时跟踪自由活动的灵长类动物的多个身体部位。该系统利用涂在动物关节上的高对比度标记,在动物活动期间持续跟踪其四肢的三维位置。每个摄像机捕获的二维坐标通过二次拟合算法进行组合并转换为三维坐标。系统的实时操作通过直接内存访问(DMA)来完成。该系统实时跟踪标记的速率为每秒52帧(fps),如果捕获视频记录以供后续离线分析,则速率可达100fps。该系统已在多个BMI灵长类动物实验中进行了测试,在这些实验中,肢体位置与数百个皮质细胞的细胞外活动的长期记录同时进行采样。在这些记录过程中,采用了多种计算模型从神经元群体活动中实时提取一系列运动学参数。该系统在这些实验条件下可靠运行,并且能够补偿自然运动过程中发生的标记遮挡。我们认为该系统还可以扩展到包括其他类生物运动的应用中。